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Answer: Answer: Differential Expression with limma: Contrast and Design Matrix, combinatorial ap
5 days ago by dariober 14k
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Answer: Answer: BRAKER3 genome annotation
4 weeks ago by dariober 14k
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Answer: Answer: How I know if it is a batch effect or are real differences between my controls a
5 weeks ago by dariober 14k
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Answer: Answer: Error Codes in Snakemake
6 weeks ago by dariober 14k
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Answer: Answer: t-test in two groups, multiple rows
9 weeks ago by dariober 14k
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458
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Answer: Answer: Snakemake's SyntaxError positional argument follows keyword argument
9 weeks ago by dariober 14k
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416
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Answer: Answer: I do not understand how to get total peaks from MACS2 shown to me. What mistake(
10 weeks ago by dariober 14k
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498
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Answer: Answer: Snakemake: how to define output from a dictionary according to wildcard
11 weeks ago by dariober 14k
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409
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Answer: Answer: What featuretype I should select for featureCounts tool.
4 months ago by dariober 14k
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1.0k
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Answer: Answer: Snakemake rule error
5 months ago by dariober 14k
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898
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Answer: Answer: Snakemake alignment script
7 months ago by dariober 14k
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625
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Answer: Answer: Error in snakemake with working shell script
9 months ago by dariober 14k
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1.4k
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Answer: Answer: how to run FacetsSuite wrapper scripts on command line
12 months ago by dariober 14k
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4.5k
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Answer: Answer: I want to correct the erroneous barcode file, and the Python code that I've writ
13 months ago by dariober 14k
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2.9k
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Answer: Answer: How to use CAFE from Orthofinder Results
15 months ago by dariober 14k
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2.3k
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Answer: Answer: GSEA on nonmodel organisms
15 months ago by dariober 14k
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745
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Answer: Answer: How to obtain highest level GO term from go_id?
16 months ago by dariober 14k
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Answer: Answer: VEP with CONDA, installing annotation sources manually, what is the right direct
17 months ago by dariober 14k
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Answer: Answer: How to install non-bioconda package in conda environment
17 months ago by dariober 14k
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3.0k
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Answer: Answer: Processing Fast5 files from ONT
17 months ago by dariober 14k
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448
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Answer: Answer: How can I identify housekeeping genes from scRNA-seq data?
17 months ago by dariober 14k
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913
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Answer: Answer: How interpret question mark symbol strand column in GFF file?
17 months ago by dariober 14k
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970
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Answer: Answer: Graphic representation of distance between samples
18 months ago by dariober 14k
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1.4k
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Answer: Answer: how to specify a specific conda environment in a specific rule with snakemake?
18 months ago by dariober 14k
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639
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Answer: Answer: Comparing groups with makeContrast in edgeR
18 months ago by dariober 14k
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601
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Answer: Answer: How to extract min and max values of a gene from different columns
18 months ago by dariober 14k
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908
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Answer: Answer: SnakeMake: MissingRuleException
19 months ago by dariober 14k
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600
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Answer: Answer: How to calculate effect size between two gene sets?
19 months ago by dariober 14k
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2.0k
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Answer: Answer: Can we use UMAP clustering on bulk data?
19 months ago by dariober 14k
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Answer: Answer: Remove NA from file while reading
20 months ago by dariober 14k
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565
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Answer: Answer: CNA calling in mouse tumor-normal WGS
20 months ago by dariober 14k
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1.8k
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Answer: Answer: bcftools split-vep -- how to split the INFO column up and also assign the ensemb
20 months ago by dariober 14k
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850
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Answer: Answer: Distinguishing records for reads in a pair in a SAM file
21 months ago by dariober 14k
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2.8k
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Answer: Answer: Write SAM file manually with pysam
22 months ago by dariober 14k
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1.7k
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Answer: Answer: How can I biuld to pipeline in nextflow to download SRA files?
22 months ago by dariober 14k
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797
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Answer: Answer: Rapid lookup of barcodes
22 months ago by dariober 14k
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Answer: Answer: blast: error while reading seqid using ncbi database
22 months ago by dariober 14k
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4.1k
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Answer: Answer: How to parallelise a for loop in bash?
23 months ago by dariober 14k
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1.9k
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Answer: Answer: snakemake error - one of the commands exited with non-zero exit code
2.0 years ago by dariober 14k
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1.4k
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Answer: Answer: Issue with trend line and confidence interval
2.0 years ago by dariober 14k
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1.6k
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Answer: Answer: snakemake workflow
2.0 years ago by dariober 14k
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1.7k
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Answer: Answer: Running bash script from PATH automatically logging into the server
2.0 years ago by dariober 14k
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2.1k
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Answer: Answer: fastp snakemake
2.1 years ago by dariober 14k
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714
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Answer: Answer: The Biostar Herald for Tuesday, March 22, 2022
2.2 years ago by dariober 14k
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2
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1.5k
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Answer: Answer: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
2.2 years ago by dariober 14k
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664
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Answer: Answer: pysam rewrite help
2.2 years ago by dariober 14k
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1.9k
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Answer: Answer: Linear regression on RNA-seq data
2.2 years ago by dariober 14k
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3.8k
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Answer: Answer: Install GATK4 and its dependencies on remote server without root privilege
2.2 years ago by dariober 14k
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1.4k
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Answer: Answer: MD5Sums of fastq files from SRA
2.2 years ago by dariober 14k
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1.5k
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Answer: Answer: Does the absence of BAI file just cause an algorithm to run slower or would it a
2.2 years ago by dariober 14k
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