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Comment: Comment: Best genome browser for manual curation of gene structure(s)?
23 days ago by William ★ 5.3k
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391
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Comment: Comment: What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
12 weeks ago by William ★ 5.3k
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0
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391
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Comment: Comment: What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
12 weeks ago by William ★ 5.3k
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1
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431
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Comment: Comment: Difference between mRNA and transcript record types in GFF3 and GTF
3 months ago by William ★ 5.3k
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2
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4.2k
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Comment: Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W
10 months ago by William ★ 5.3k
1
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0
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674
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Comment: Comment: Reduce poly-N regions longer than 200bp back to 200bp in a reference genome FAST
13 months ago by William ★ 5.3k
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1
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674
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Comment: Comment: Reduce poly-N regions longer than 200bp back to 200bp in a reference genome FAST
13 months ago by William ★ 5.3k
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1
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1.0k
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Comment: Comment: How to convert VCF (with possible predicted gene effects) to protein fasta/MSA
15 months ago by William ★ 5.3k
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804
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Comment: Comment: How to estimate and visualize haplotype blocks on a phased VCF/BCF
15 months ago by William ★ 5.3k
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0
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1.1k
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Comment: Comment: how to calculate %of missing genotype in vcf file
19 months ago by William ★ 5.3k
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0
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1.7k
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Comment: Comment: Is it possible to construct a full genome from whole sequence VCF files containi
2.6 years ago by William ★ 5.3k
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0
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1.4k
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Comment: Comment: Merging VCF files.
2.6 years ago by William ★ 5.3k
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1
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1.4k
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Comment: Comment: Strange speed up in GATK LeftAlignIndels
2.6 years ago by William ★ 5.3k
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0
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2.7k
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Comment: Comment: User friendly (visual&interactive) VCF/BCF mining tools (2021)
2.6 years ago by William ★ 5.3k
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0
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2.7k
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Comment: Comment: User friendly (visual&interactive) VCF/BCF mining tools (2021)
2.6 years ago by William ★ 5.3k
0
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1
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2.7k
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Comment: Comment: User friendly (visual&interactive) VCF/BCF mining tools (2021)
2.6 years ago by William ★ 5.3k
0
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0
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3.5k
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Comment: Comment: How to set variant FILTER in a VCF file based on overlap with regions in a BED
2.7 years ago by William ★ 5.3k
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0
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891
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Comment: Comment: Wobbly average GC profile spanning entire read length; what the cause and is it
2.8 years ago by William ★ 5.3k
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0
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1.3k
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Comment: Comment: Best pre and post alignment / variant calling QC tools for many WGS/RNA samples
2.9 years ago by William ★ 5.3k
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1
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3.4k
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Comment: Comment: 2021: state and usuge of compressed file standards better than BAM and FASTQ
3.0 years ago by William ★ 5.3k
0
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1
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3.4k
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Comment: Comment: 2021: state and usuge of compressed file standards better than BAM and FASTQ
3.0 years ago by William ★ 5.3k
0
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1
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3.4k
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Comment: Comment: 2021: state and usuge of compressed file standards better than BAM and FASTQ
3.0 years ago by William ★ 5.3k
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0
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1.3k
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Comment: C: Best (GATK compatible) RadSeq/GBS pipeline in 2021
3.1 years ago by William ★ 5.3k
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0
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2.0k
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Comment: C: How to convert a VCF with genotypes and phasing info to list of haplotypes for R
3.3 years ago by William ★ 5.3k
1
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0
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2.9k
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Comment: C: How to filter a gff3 file by gene IDs
3.3 years ago by William ★ 5.3k
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0
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2.9k
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Comment: C: How to filter a gff3 file by gene IDs
3.3 years ago by William ★ 5.3k
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1
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2.9k
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Comment: C: How to filter a gff3 file by gene IDs
3.3 years ago by William ★ 5.3k
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0
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780
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Comment: C: Count all (non N) nucleotides within regions defined in BED file
3.4 years ago by William ★ 5.3k
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0
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1.5k
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Comment: C: Best way to find intervals for parallelization of joint variant calling
3.4 years ago by William ★ 5.3k
0
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1
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1.5k
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Comment: C: Best way to find intervals for parallelization of joint variant calling
3.4 years ago by William ★ 5.3k
0
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2
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4.1k
views
Comment: C: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
4.0 years ago by William ★ 5.3k
0
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1
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4.1k
views
Comment: C: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
4.0 years ago by William ★ 5.3k
0
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1
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4.1k
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Comment: C: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
4.0 years ago by William ★ 5.3k
0
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1
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3.7k
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Comment: C: Breakdancer Compile Error: Regionlimitedbamreader.Hpp:23:5: Error: ‘Bam_Iter_T’
updated 4.6 years ago by 43k • written 10.7 years ago by ★ 5.3k
1
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0
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18k
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Comment: C: Combine Single Sample Vcf To Multi Sample Vcf
updated 5.3 years ago by 43k • written 10.9 years ago by ★ 5.3k
0
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0
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4.6k
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Comment: C: Difference between . and ./. for missing genotype in VCF
5.5 years ago by William ★ 5.3k
0
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0
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3.3k
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Comment: C: How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using
6.1 years ago by William ★ 5.3k
0
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0
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3.3k
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Comment: C: How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using
6.1 years ago by William ★ 5.3k
0
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1
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3.3k
views
Comment: C: How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using
6.1 years ago by William ★ 5.3k
0
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1
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3.3k
views
Comment: C: How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using
6.1 years ago by William ★ 5.3k
0
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1
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3.3k
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Comment: C: How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using
6.1 years ago by William ★ 5.3k
0
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1
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3.3k
views
Comment: C: Sensitive (BLAST like) and fast alignment of millions of sequences against human
6.2 years ago by William ★ 5.3k
0
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1
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3.3k
views
Comment: C: Sensitive (BLAST like) and fast alignment of millions of sequences against human
6.2 years ago by William ★ 5.3k
0
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0
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3.3k
views
Comment: C: Sensitive (BLAST like) and fast alignment of millions of sequences against human
6.2 years ago by William ★ 5.3k
0
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1
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2.2k
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Comment: C: Should I use a bad/ mediocre gene model as input for STAR RNA-seq alignment?
6.3 years ago by William ★ 5.3k
0
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1
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2.7k
views
Comment: C: How to display a VCF/BCF file or stream as a paginated table in a python web fra
6.5 years ago by William ★ 5.3k
0
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0
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2.7k
views
Comment: C: How to display a VCF/BCF file or stream as a paginated table in a python web fra
6.5 years ago by William ★ 5.3k
0
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0
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2.3k
views
Comment: C: Is it possible to use haplotypes instead of SNPs for association testing with ph
6.7 years ago by William ★ 5.3k
0
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0
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2.3k
views
Comment: C: Is it possible to use haplotypes instead of SNPs for association testing with ph
6.7 years ago by William ★ 5.3k
0
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0
replies
3.6k
views
Comment: C: Python library for parsing bcftools stats file
6.8 years ago by William ★ 5.3k
140 results • Page 1 of 3
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