Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
6
votes
5
replies
18k
views
7 follow
How different is rlog transformation from vst transformation in DESeq2
DESeq2 count normalization
updated 9 months ago by 82k • written 5.7 years ago by ▴ 700
1
vote
0
replies
928
views
Comment: Comment: How to find DEG within a cluster between two groups without any replication info
23 months ago by piyushjo ▴ 700
0
votes
1
reply
928
views
Comment: Comment: How to find DEG within a cluster between two groups without any replication info
23 months ago by piyushjo ▴ 700
0
votes
0
replies
673
views
MACS2: broad and broad no-model output peaks are exactly the same. Is something wrong?
ChIP-seq macs2 H3K27ac
23 months ago by piyushjo ▴ 700
0
votes
1
reply
5.0k
views
Answer: A: How to retrieve sets of protein sequences?
updated 3.7 years ago by 44k • written 5.5 years ago by ▴ 700
1
vote
1
reply
1.2k
views
Comment: C: Is Pseudotime analysis most applicable to time-series experiments?
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
1.1k
views
Comment: C: Advice for a start in Bioinformatics
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.7k
views
Answer: A: pre-mRNA GTF reference for 10x
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.2k
views
Comment: C: principal component analysis (PCA) of single cell samples which come from differ
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
2.2k
views
Answer: A: principal component analysis (PCA) of single cell samples which come from differ
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
2.4k
views
Comment: C: Compare signatures between scRNA-seq clusters in R
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
697
views
Comment: C: Tophat / output without XS
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
4.4k
views
Comment: C: Recommendation for packages for cell type deconvolution from bulk RNAseq data?
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.1k
views
Comment: C: PCA on FPKM data
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
2.2k
views
Comment: C: WGCNA "trait" file format?
4.0 years ago by piyushjo ▴ 700
1
vote
1
reply
2.1k
views
Answer: C: PCA on FPKM data
4.0 years ago by piyushjo ▴ 700
0
votes
2
replies
2.2k
views
Comment: C: WGCNA "trait" file format?
4.0 years ago by piyushjo ▴ 700
0
votes
1
reply
2.2k
views
Comment: C: WGCNA "trait" file format?
4.0 years ago by piyushjo ▴ 700
0
votes
0
replies
738
views
Comment: C: Classification of long non-coding RNAs
4.0 years ago by piyushjo ▴ 700
2
votes
0
replies
14k
views
Comment: C: Rename Idents in Seurat Object
4.0 years ago by piyushjo ▴ 700
2
votes
0
replies
936
views
Comment: C: Raw Data Requirement for RNA-Seq paper submission
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
3.5k
views
Comment: C: Batch correction in scRNA-seq data via fastMNN | pro/contra
4.0 years ago by piyushjo ▴ 700
1
vote
0
replies
3.0k
views
Comment: C: Have we failed as bioinformatician in this time of COVID-19
4.1 years ago by piyushjo ▴ 700
0
votes
0
replies
20k
views
Comment: C: ggplot2 labeling and coloring specific Data points in Scatter Plot
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
2.5k
views
Comment: C: Optimal K-means cluster # for large data (R)
4.1 years ago by piyushjo ▴ 700
0
votes
0
replies
2.2k
views
Comment: C: Deseq2 design matrix for multiple factors
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
2.5k
views
Answer: C: Optimal K-means cluster # for large data (R)
4.1 years ago by piyushjo ▴ 700
1
vote
0
replies
949
views
Comment: C: Seurat code availability for published papers
4.1 years ago by piyushjo ▴ 700
0
votes
0
replies
952
views
Comment: C: DESeq analysis with different replication
4.1 years ago by piyushjo ▴ 700
0
votes
0
replies
974
views
Comment: C: Marker genes of a scRNA-Seq experiment not found in the processed data set gene
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
974
views
Comment: C: Marker genes of a scRNA-Seq experiment not found in the processed data set gene
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
1.3k
views
Comment: C: How to best summarize read counts overlapping promoters when read counts are def
4.1 years ago by piyushjo ▴ 700
0
votes
0
replies
1.1k
views
Comment: C: How to distinguish malignant vs non-malignant cells based on gene expression dat
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
1.1k
views
Comment: C: How to distinguish malignant vs non-malignant cells based on gene expression dat
4.1 years ago by piyushjo ▴ 700
0
votes
0
replies
1.3k
views
Answer: A: How to map find specific genes in RNA Seq dataset ?
4.1 years ago by piyushjo ▴ 700
1
vote
1
reply
1.3k
views
Comment: C: How to map find specific genes in RNA Seq dataset ?
4.1 years ago by piyushjo ▴ 700
1
vote
1
reply
1.3k
views
Comment: C: How to map find specific genes in RNA Seq dataset ?
4.1 years ago by piyushjo ▴ 700
1
vote
1
reply
1.3k
views
Comment: C: How to map find specific genes in RNA Seq dataset ?
4.1 years ago by piyushjo ▴ 700
8
votes
3
replies
4.0k
views
How to make an intronic GTF for alignment
RNA-Seq intronic-gtf
updated 11 months ago by 44k • written 4.1 years ago by ▴ 700
0
votes
0
replies
4.0k
views
Comment: C: How to make an intronic GTF for alignment
4.1 years ago by piyushjo ▴ 700
1
vote
0
replies
627
views
Comment: C: Cannot find a gene in the counts table
4.1 years ago by piyushjo ▴ 700
2
votes
0
replies
22k
views
Comment: C: Subsetting - Raw Counts from Seurat Object
4.1 years ago by piyushjo ▴ 700
0
votes
1
reply
22k
views
Comment: C: Subsetting - Raw Counts from Seurat Object
4.1 years ago by piyushjo ▴ 700
1
vote
0
replies
2.4k
views
Comment: C: STAR genome index Error
4.2 years ago by piyushjo ▴ 700
0
votes
1
reply
2.4k
views
Comment: C: STAR genome index Error
4.2 years ago by piyushjo ▴ 700
0
votes
1
reply
2.4k
views
Comment: C: STAR genome index Error
4.2 years ago by piyushjo ▴ 700
0
votes
0
replies
7.5k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
4.2 years ago by piyushjo ▴ 700
1
vote
0
replies
7.5k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
4.2 years ago by piyushjo ▴ 700
0
votes
1
reply
7.5k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
4.2 years ago by piyushjo ▴ 700
2
votes
0
replies
1.3k
views
Comment: C: Consensus WGCNA: soft-threshold power selection
4.2 years ago by piyushjo ▴ 700
147 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6