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David Quigley ♦ 11k
Role: Moderator
Status: New
Handle: @David Quigley458
Reputation: 10710
Joined: 20 months ago
Last seen: 2.5 years ago
Location: San Francisco

I am a cancer genetics researcher at UCSF. My work in Allan Balmain's lab centers on using analytical methods to identify genetic networks associated with susceptibility to cancer or which are selectively modified after a tumor develops. We primarily use mouse models of skin and lung cancer. My training is in Computer Science and Biomedical Informatics; I also have worked as a professional software developer.

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Answer: A: R - Pairwise Combinations Of Rows From Table?
10.3 years ago
David Quigley 11k • updated 21 months ago
RamRS 21k
4
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6
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2.3k
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Answer: A: Hypermetric Distribution Of Snps In Pathways
9.8 years ago
David Quigley 11k • updated 2.1 years ago
RamRS 21k
33
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21
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9.6k
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14 follow
Bulk Download Of Ncbi Gene "Summary" Field
gene ncbi
10.6 years ago
David Quigley 11k • updated 2.2 years ago
hsiaoyi0504 • 40
1
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1
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978
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Answer: A: BinGo customerized work flow
5.0 years ago
David Quigley 11k • updated 2.5 years ago
RamRS 21k
5
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1
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1.8k
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Answer: A: Biomart Vs Amigo
10.6 years ago
David Quigley 11k • updated 2.5 years ago
RamRS 21k
9
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7.5k
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Answer: A: How Pivotal Is A Masters When Getting A Job In Bioinformatics?
10.6 years ago
David Quigley 11k • updated 2.5 years ago
RamRS 21k
5
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0
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1.6k
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Answer: A: Is Variance Stabilization Neccessary When Using Sam?
10.6 years ago
David Quigley 11k • updated 2.5 years ago
RamRS 21k
94
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18
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Answer: A: What Is The Best Pipeline For Human Whole Exome Sequencing?
10.6 years ago
David Quigley 11k • updated 2.5 years ago
RamRS 21k
1
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1.1k
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Comment: C: spreadsheet tools alternative
3.4 years ago
David Quigley 11k
1
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4.4k
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Comment: C: Where can I get ?or how can I make a mappability track for hg38 assembly
3.5 years ago
David Quigley 11k
1
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Job: UCSF Bioinformatics Junior Specialist, Helen Diller Cancer Center
RNA-Seq next-gen immunology Job
5.1 years ago
David Quigley 11k
5
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1
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2.3k
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Comment: C: bioinformatics conference ranking
5.2 years ago
David Quigley 11k
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Answer: A: EGFR and KRAS expression
5.3 years ago
David Quigley 11k
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Comment: C: Identify somatic mutations in cancer exome without a matched pair.
5.3 years ago
David Quigley 11k
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Comment: C: Is the PAM50 subtype available for TCGA BRCA data?
5.3 years ago
David Quigley 11k
1
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3.4k
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Answer: A: Get number of variations in a huge VCF using Tabix?
5.3 years ago
David Quigley 11k
2
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4.9k
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Answer: A: Is the PAM50 subtype available for TCGA BRCA data?
5.3 years ago
David Quigley 11k
42
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14
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5.2k
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11 follow
Reproducible Research: A More General Sweave?
10.6 years ago
David Quigley 11k • updated 5.3 years ago
Elke Schaper • 60
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Comment: C: Can the code of a R package be changed? How?
5.7 years ago
David Quigley 11k
0
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1
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2.0k
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Comment: C: Affy Axiom array - many cases of two probe set IDs sharing the same Affy SNP ID
5.8 years ago
David Quigley 11k
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Comment: C: Error in limma : maimages (cannot open the connection)
5.9 years ago
David Quigley 11k
0
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1
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1.6k
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Answer: A: Error in limma : maimages (cannot open the connection)
5.9 years ago
David Quigley 11k
0
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1.7k
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Comment: C: R library/package for pairwise differential expression for microarray data?
5.9 years ago
David Quigley 11k
3
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1
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1.7k
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Answer: A: R library/package for pairwise differential expression for microarray data?
5.9 years ago
David Quigley 11k
1
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1.9k
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Answer: A: Multiple testing for eQTL data with correlated SNPs
6.0 years ago
David Quigley 11k
0
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1
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1.5k
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Comment: C: What are the output values for PICNIC when called from the binary build?
6.0 years ago
David Quigley 11k
1
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3
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1.5k
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What are the output values for PICNIC when called from the binary build?
copy-number PICNIC SNP
6.0 years ago
David Quigley 11k
0
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Comment: C: Rna-Sequencing For Nci-60 Data
6.1 years ago
David Quigley 11k
1
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6.7k
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Comment: C: Permutation Based Thresholds For Eqtl Analysis?
6.1 years ago
David Quigley 11k
1
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6.7k
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Comment: C: Permutation Based Thresholds For Eqtl Analysis?
6.1 years ago
David Quigley 11k
0
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1
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6.7k
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Comment: C: Permutation Based Thresholds For Eqtl Analysis?
6.1 years ago
David Quigley 11k
0
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2.0k
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Answer: A: Is there any easy way to replicate R packages between two machines?
6.1 years ago
David Quigley 11k
0
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Comment: C: Reproducible Research: A More General Sweave?
6.3 years ago
David Quigley 11k
2
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1.8k
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Answer: A: Looking for gene expression data from cultured human cells treated with drugs
6.3 years ago
David Quigley 11k
10
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5
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2.0k
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Hundreds Of Bad Annotations On Affymetrix Mogene 1.0. Why?
microarray affymetrix annotation mouse
9.0 years ago
David Quigley 11k • updated 6.4 years ago
Biostar 20
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Comment: C: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
6.9 years ago
David Quigley 11k
1
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1
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1.2k
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Answer: A: Question On The Construction Of Gene Coexpression Networks
6.9 years ago
David Quigley 11k
0
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1
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1.2k
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Comment: C: Question On The Construction Of Gene Coexpression Networks
6.9 years ago
David Quigley 11k
0
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6.7k
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Comment: C: Permutation Based Thresholds For Eqtl Analysis?
7.1 years ago
David Quigley 11k
0
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2.9k
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Comment: C: How To Identify The Origin Of Tumor By Rnaseq
7.1 years ago
David Quigley 11k
0
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2.8k
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Comment: C: Microarray Across Experiments
7.1 years ago
David Quigley 11k
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Comment: C: How To Force Identical Topology Between Two Subnetworks (Same Nodes, Different E
7.1 years ago
David Quigley 11k
0
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1
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2.8k
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Answer: A: How To Force Identical Topology Between Two Subnetworks (Same Nodes, Different E
7.1 years ago
David Quigley 11k
1
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1
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2.7k
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Comment: C: Vanilla Local Galaxy Installation Is Giving Error: "No Module Called Eggs"
7.2 years ago
David Quigley 11k
0
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4.1k
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Comment: C: Question About Tcga Snp-Array Data
7.2 years ago
David Quigley 11k
1
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1
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4.1k
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Answer: A: Question About Tcga Snp-Array Data
7.2 years ago
David Quigley 11k
0
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5.5k
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Comment: C: How To Convert Lod Score To P- Value
7.2 years ago
David Quigley 11k
0
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3.3k
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Comment: C: Rna-Sequencing For Nci-60 Data
7.3 years ago
David Quigley 11k
0
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3.7k
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Comment: C: Qtl Analysis Using Principal Components As Covariates
7.3 years ago
David Quigley 11k
1
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1
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3.7k
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Answer: A: Qtl Analysis Using Principal Components As Covariates
7.3 years ago
David Quigley 11k
421 results • Page 1 of 9
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