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Comment: C: ChIP-Seq samples : FASTQ quality control
6.1 years ago by erwan.scaon ▴ 940
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4.0k
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Comment: C: ChIP-Seq samples : FASTQ quality control
6.1 years ago by erwan.scaon ▴ 940
0
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1
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4.0k
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Comment: C: ChIP-Seq samples : FASTQ quality control
6.1 years ago by erwan.scaon ▴ 940
0
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1
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4.0k
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Comment: C: ChIP-Seq samples : FASTQ quality control
6.1 years ago by erwan.scaon ▴ 940
0
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0
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4.0k
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Comment: C: ChIP-Seq samples : FASTQ quality control
6.1 years ago by erwan.scaon ▴ 940
0
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1
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4.0k
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Comment: C: ChIP-Seq samples : FASTQ quality control
6.1 years ago by erwan.scaon ▴ 940
0
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1
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4.0k
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Comment: C: ChIP-Seq samples : FASTQ quality control
updated 6.1 years ago by 141k • written 6.1 years ago by ▴ 940
1
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1
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5.5k
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Comment: C: RefSeq ID to TaxID?
6.1 years ago by erwan.scaon ▴ 940
0
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0
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2.4k
views
Comment: C: Diffbind error : sequences from an unspecified genome; no seqlengths
6.1 years ago by erwan.scaon ▴ 940
0
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0
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2.4k
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Comment: C: IGV - is there a way to extract bulk information?
6.1 years ago by erwan.scaon ▴ 940
0
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1
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4.9k
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Comment: C: Pipeline for hybrid genome assembly of long and short reads AND how to deal with
6.1 years ago by erwan.scaon ▴ 940
1
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1
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6.5k
views
Answer: A: parsing vcf file
6.2 years ago by erwan.scaon ▴ 940
0
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0
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2.6k
views
Comment: C: Refseq human reference transcriptome link for RNA-seq differential expression an
6.2 years ago by erwan.scaon ▴ 940
1
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1
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3.7k
views
Comment: C: Kallisto read count processed does not tally
6.2 years ago by erwan.scaon ▴ 940
1
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1
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3.8k
views
Comment: C: CosmicCodingMuts.vcf.gz for hg38?
6.2 years ago by erwan.scaon ▴ 940
0
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0
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4.2k
views
Comment: C: Saving IGV images for bigwig files
6.2 years ago by erwan.scaon ▴ 940
3
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1
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5.0k
views
Answer: A: how to annotate RNA-seq
6.3 years ago by erwan.scaon ▴ 940
5
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0
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9.7k
views
Answer: A: How to convert gff file to a csv file
6.3 years ago by erwan.scaon ▴ 940
2
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0
replies
13k
views
Answer: A: biomaRt mmusculus_gene_ensembl dataset
6.4 years ago by erwan.scaon ▴ 940
0
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1
reply
13k
views
Comment: C: biomaRt mmusculus_gene_ensembl dataset
6.4 years ago by erwan.scaon ▴ 940
0
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1
reply
1.2k
views
Comment: C: Balanced, nonredundant set of bacterial genomes
6.4 years ago by erwan.scaon ▴ 940
0
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1
reply
2.3k
views
Trying to map informations between two Mus musculus strains with biomaRt external_gene_name field
biomaRt 129S1/SvImJ external_gene_name ensembl
updated 6.4 years ago by ★ 2.0k • written 6.4 years ago by ▴ 940
28
votes
1
reply
16k
views
Read pair orientation : Illumina TruSeq Stranded mRNA library
featureCounts TruSeq strandSpecific
updated 6.4 years ago by 13k • written 6.4 years ago by ▴ 940
0
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6
replies
2.3k
views
Looking for a thorough annotation for non-primary assembly units in GRCm38
GRCm38 mus musculus GTF GFF GENCODE
6.4 years ago by erwan.scaon ▴ 940
0
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0
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2.3k
views
Comment: C: Looking for a thorough annotation for non-primary assembly units in GRCm38
6.4 years ago by erwan.scaon ▴ 940
0
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1
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2.3k
views
Comment: C: Looking for a thorough annotation for non-primary assembly units in GRCm38
6.4 years ago by erwan.scaon ▴ 940
0
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1
reply
2.3k
views
Comment: C: Looking for a thorough annotation for non-primary assembly units in GRCm38
6.4 years ago by erwan.scaon ▴ 940
3
votes
1
reply
3.1k
views
Answer: A: Discrepancy between abundance.tsv and tx2gene.csv
6.5 years ago by erwan.scaon ▴ 940
2
votes
0
replies
1.8k
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Answer: A: Tools for Copy Number Variation analysis from ion Proton data.
6.5 years ago by erwan.scaon ▴ 940
0
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1
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1.8k
views
Comment: C: local blastn against one subgroup of species
6.5 years ago by erwan.scaon ▴ 940
0
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1
reply
4.9k
views
Comment: C: Trying to match Accession numbers to Taxonomy IDs
6.5 years ago by erwan.scaon ▴ 940
0
votes
1
reply
4.9k
views
Comment: C: Trying to match Accession numbers to Taxonomy IDs
6.5 years ago by erwan.scaon ▴ 940
1
vote
1
reply
4.9k
views
Comment: C: Trying to match Accession numbers to Taxonomy IDs
6.5 years ago by erwan.scaon ▴ 940
0
votes
1
reply
4.9k
views
Comment: C: Trying to match Accession numbers to Taxonomy IDs
6.5 years ago by erwan.scaon ▴ 940
0
votes
1
reply
4.9k
views
Comment: C: Trying to match Accession numbers to Taxonomy IDs
6.5 years ago by erwan.scaon ▴ 940
0
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0
replies
4.9k
views
Answer: A: Trying to match Accession numbers to Taxonomy IDs
6.6 years ago by erwan.scaon ▴ 940
0
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0
replies
14k
views
Comment: C: Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
6.6 years ago by erwan.scaon ▴ 940
0
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0
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7.4k
views
Comment: C: Obtain full taxonomic hierarchy from multiple species names
6.6 years ago by erwan.scaon ▴ 940
1
vote
0
replies
4.5k
views
Comment: C: STAR mapper: unrecoginzed parameter name "sjdbInsertSave" in input "genomeParame
6.8 years ago by erwan.scaon ▴ 940
0
votes
1
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4.5k
views
Answer: A: STAR mapper: unrecoginzed parameter name "sjdbInsertSave" in input "genomeParame
6.8 years ago by erwan.scaon ▴ 940
12
votes
4
replies
4.5k
views
Retrieve genbank viral genomes
ncbi genbank viral-genome
updated 13 months ago by 43k • written 6.8 years ago by ▴ 940
2
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1
reply
4.5k
views
Answer: A: Retrieve genbank viral genomes
6.8 years ago by erwan.scaon ▴ 940
5
votes
0
replies
10k
views
Answer: A: COSMIC vcf file compatibility for Mutect2
7.1 years ago by erwan.scaon ▴ 940
18
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6
replies
10k
views
COSMIC vcf file compatibility for Mutect2
GATK Mutect2 COSMIC VCF
7.1 years ago by erwan.scaon ▴ 940
0
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0
replies
5.5k
views
Answer: A: GATK BaseRecalibrator - Input files knownSites and reference have incompatible c
7.3 years ago by erwan.scaon ▴ 940
8
votes
4
replies
10k
views
Answer: A: COSMIC vcf file compatibility for Mutect2
7.3 years ago by erwan.scaon ▴ 940
0
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0
replies
5.5k
views
Comment: A: blast culling_limit option behavior
7.4 years ago by erwan.scaon ▴ 940
5
votes
3
replies
6.0k
views
Quality control for Ion Torrent
sequencing
updated 7.5 years ago by 9.7k • written 7.5 years ago by ▴ 940
1
vote
0
replies
7.2k
views
Answer: A: Tools For De Novo Assembly For Exome Sequencing Data
11.5 years ago by erwan.scaon ▴ 940
3
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1
reply
7.0k
views
Answer: A: Existing Tools For Building A De Bruijn Graph From Raw Reads
11.8 years ago by erwan.scaon ▴ 940
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