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5
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Answer: A: Interpretation of RNA seq pipeline in a paper
4.5 years ago by shawn.w.foley ★ 1.3k
4
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1
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7.8k
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Answer: A: GSEA: Does a gene set really have positive and negative enrichment scores?
4.6 years ago by shawn.w.foley ★ 1.3k
0
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0
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1.9k
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Answer: A: How to count total small RNAs (known and novel) in my aligned reads?
4.7 years ago by shawn.w.foley ★ 1.3k
1
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2
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5.8k
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Answer: A: How to create ggplot for each dataframe in list and export them?
4.7 years ago by shawn.w.foley ★ 1.3k
1
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0
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2.9k
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Answer: A: Question: Calculating each gene's mean of intron length
4.7 years ago by shawn.w.foley ★ 1.3k
3
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1
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965
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Answer: A: How to sort numbers in two columns in Ascending Order
4.7 years ago by shawn.w.foley ★ 1.3k
4
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1
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1.5k
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Answer: A: count and generate count files for multiple bam files
4.7 years ago by shawn.w.foley ★ 1.3k
2
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0
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1.2k
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Answer: A: RNA-Seq Differential gene expression
4.7 years ago by shawn.w.foley ★ 1.3k
3
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1
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2.1k
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Answer: A: Error with HTseq RNAseq read count
4.7 years ago by shawn.w.foley ★ 1.3k
3
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1
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3.2k
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Answer: A: Volcano plot: Using Multiple results
4.8 years ago by shawn.w.foley ★ 1.3k
2
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3
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1.6k
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Answer: A: error in duplicate row.names in getting gene symbols
4.8 years ago by shawn.w.foley ★ 1.3k
2
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1
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4.0k
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Answer: A: nperm value in GSEA setting
4.8 years ago by shawn.w.foley ★ 1.3k
2
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0
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3.2k
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Answer: A: MACS2 result of FDR
4.9 years ago by shawn.w.foley ★ 1.3k
1
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2
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1.2k
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Answer: A: SNPs from RNA-Seq Compare with SNPs from DNA-Seq
4.9 years ago by shawn.w.foley ★ 1.3k
3
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0
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1.3k
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Answer: A: DESeq2 results versus by eye comparison in IGV
4.9 years ago by shawn.w.foley ★ 1.3k
4
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2
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854
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Answer: A: issue with ifelse statement
4.9 years ago by shawn.w.foley ★ 1.3k
2
votes
2
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1.6k
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Answer: A: Can I convert from PSI to RPKM?
4.9 years ago by shawn.w.foley ★ 1.3k
3
votes
1
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956
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Answer: A: Extract and retain only chromosome info in GWAS sumstats file
5.0 years ago by shawn.w.foley ★ 1.3k
0
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1
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812
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Answer: A: Can detection of SNP from DNA (Intronic part) and mRNA (Exonic Part) make some
5.0 years ago by shawn.w.foley ★ 1.3k
1
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2
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7.2k
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Answer: A: How to group gene dataset and run t.test for each row for every gene in R?
5.0 years ago by shawn.w.foley ★ 1.3k
0
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1
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3.6k
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Answer: A: CCLE miRNA expression data
5.0 years ago by shawn.w.foley ★ 1.3k
0
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1
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2.9k
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Answer: A: Should I keep all HTSeq table informations for edgeR analysis?
5.0 years ago by shawn.w.foley ★ 1.3k
0
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0
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1.2k
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Answer: A: Variants in Exon or Intron
5.0 years ago by shawn.w.foley ★ 1.3k
1
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0
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1.5k
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Answer: A: Tool to perform GSEA on mapped genes
5.0 years ago by shawn.w.foley ★ 1.3k
0
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0
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1.8k
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Answer: A: Estimate percentage of alternative splicing
5.0 years ago by shawn.w.foley ★ 1.3k
3
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2
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2.1k
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Answer: A: Question about differentially expressed genes selection for low sample size data
5.0 years ago by shawn.w.foley ★ 1.3k
4
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1
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821
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Answer: A: Trouble manipulating dataset
5.0 years ago by shawn.w.foley ★ 1.3k
0
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1
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1.2k
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Answer: A: Something strange in RNA-seq raw reads, It is contamination or not?
5.0 years ago by shawn.w.foley ★ 1.3k
1
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1
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4.5k
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Answer: A: Fold change cut off enrichment analysis
5.1 years ago by shawn.w.foley ★ 1.3k
0
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1
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2.1k
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Answer: A: Multiple testing correction issue
5.1 years ago by shawn.w.foley ★ 1.3k
2
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0
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2.0k
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Answer: A: RNA-Seq Analysis with DEXSeq
5.1 years ago by shawn.w.foley ★ 1.3k
3
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0
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1.1k
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Answer: A: RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
5.1 years ago by shawn.w.foley ★ 1.3k
0
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0
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1.5k
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Answer: A: Statistics on differentially expressed genes
5.1 years ago by shawn.w.foley ★ 1.3k
2
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0
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1.0k
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Answer: A: Writing scripts for a single vs all chromosomes
5.2 years ago by shawn.w.foley ★ 1.3k
2
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1
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2.0k
views
Answer: C: Post PCA analysis
5.2 years ago by shawn.w.foley ★ 1.3k
2
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0
replies
2.4k
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Answer: A: Transcription factor binding sites using ATAC-seq peaks
5.2 years ago by shawn.w.foley ★ 1.3k
2
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1
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2.2k
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Answer: A: CLIP-seq peak analysis
5.2 years ago by shawn.w.foley ★ 1.3k
1
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1
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3.0k
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Answer: C: Too low FPKM values from StringTie
5.2 years ago by shawn.w.foley ★ 1.3k
0
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1
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1.2k
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Answer: A: Unequally pooling libraries for RNAseq?
5.2 years ago by shawn.w.foley ★ 1.3k
0
votes
2
replies
3.8k
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Answer: A: Get -400bp to +50bp sequence of gene from gff3 file
5.3 years ago by shawn.w.foley ★ 1.3k
0
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0
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1.2k
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Answer: A: Finding deferentially active regions with DESeq2
5.4 years ago by shawn.w.foley ★ 1.3k
1
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0
replies
1.9k
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Answer: A: Venn diagram generation criteria from RNAseq data
5.4 years ago by shawn.w.foley ★ 1.3k
2
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1
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1.3k
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Answer: A: Extract rows from file two having the 4th column ( which contain /1 /2 signs ) i
5.5 years ago by shawn.w.foley ★ 1.3k
2
votes
2
replies
11k
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Answer: A: GSEA, input metrics
5.7 years ago by shawn.w.foley ★ 1.3k
1
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0
replies
2.4k
views
Answer: A: How do strand specific sequencing protocols work?
6.3 years ago by shawn.w.foley ★ 1.3k
4
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1
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5.2k
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Answer: A: Replicates for RNA-seq from 1 cell lines undergoing different treatments
6.3 years ago by shawn.w.foley ★ 1.3k
1
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0
replies
1.8k
views
Answer: A: How do I extract normalized signal values for Affy SNP 6.0 chip using oligo or c
6.4 years ago by shawn.w.foley ★ 1.3k
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