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579
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Genome-guided transcriptome reconstruction
RNA-seq transcriptome
4.9 years ago by caggtaagtat ★ 1.9k
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0
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21k
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Comment: C: what do the headers of the rMATS output files mean?
4.9 years ago by caggtaagtat ★ 1.9k
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0
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4.0k
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Comment: C: trim data with trimmomatic
5.0 years ago by caggtaagtat ★ 1.9k
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2
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3.9k
views
Comment: C: Using STAR mapping multiple files get loop issue
5.0 years ago by caggtaagtat ★ 1.9k
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1
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3.9k
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Answer: A: Using STAR mapping multiple files get loop issue
5.0 years ago by caggtaagtat ★ 1.9k
5
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1
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2.1k
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Answer: A: Question about exon/intron counting in RNA-seq dataset analysis
5.1 years ago by caggtaagtat ★ 1.9k
0
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0
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2.8k
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Comment: C: Difference between GRCh38.91 and GRCh38.p12
5.1 years ago by caggtaagtat ★ 1.9k
5
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2
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2.8k
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Difference between GRCh38.91 and GRCh38.p12
genome annotation
updated 5.1 years ago by 23k • written 5.1 years ago by ★ 1.9k
1
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0
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1.7k
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Answer: A: What human transcriptome annotation to use for RNA-seq analysis
5.1 years ago by caggtaagtat ★ 1.9k
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0
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3.2k
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Answer: A: What to do after differential expression
5.1 years ago by caggtaagtat ★ 1.9k
2
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1
reply
12k
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Answer: A: How should I handle the raw reads with failed per base sequence content in fastQ
5.1 years ago by caggtaagtat ★ 1.9k
2
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0
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2.7k
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Answer: A: Only 1% of reads are used as "input reads" in STAR
5.2 years ago by caggtaagtat ★ 1.9k
1
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0
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15k
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Comment: C: Suggestions for Trimmomatic and "illuminaclip" parameter
5.2 years ago by caggtaagtat ★ 1.9k
9
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1
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15k
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Answer: A: Suggestions for Trimmomatic and "illuminaclip" parameter
5.2 years ago by caggtaagtat ★ 1.9k
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0
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1.4k
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Answer: A: Enrichment Analysis with only GeneSymbols
5.2 years ago by caggtaagtat ★ 1.9k
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0
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1.2k
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Comment: C: Splice site usage from RNA-seq data
5.3 years ago by caggtaagtat ★ 1.9k
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0
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4.7k
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Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.3 years ago by caggtaagtat ★ 1.9k
1
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0
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3.3k
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Answer: A: Pathway enrichment and analysis of mice gene sets in R platform
5.3 years ago by caggtaagtat ★ 1.9k
0
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0
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4.7k
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Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.3 years ago by caggtaagtat ★ 1.9k
0
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1
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4.7k
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Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.3 years ago by caggtaagtat ★ 1.9k
0
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0
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4.7k
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Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.3 years ago by caggtaagtat ★ 1.9k
0
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2
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4.7k
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Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.3 years ago by caggtaagtat ★ 1.9k
3
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11
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4.7k
views
Extract read sequence from BAM files depending on the alignment coordinates
RNA-seq
updated 5.3 years ago by ★ 3.8k • written 5.3 years ago by ★ 1.9k
0
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0
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1.9k
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Comment: C: Transcript assembly with nanopore long reads
5.3 years ago by caggtaagtat ★ 1.9k
0
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1
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1.9k
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Comment: C: Transcript assembly with nanopore long reads
5.3 years ago by caggtaagtat ★ 1.9k
2
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4
replies
1.9k
views
Transcript assembly with nanopore long reads
assembly transcriptome long reads
updated 5.3 years ago by 6.4k • written 5.3 years ago by ★ 1.9k
1
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0
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1.6k
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Comment: C: Differential expression comparing two groups normalized to a third group
5.4 years ago by caggtaagtat ★ 1.9k
0
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0
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1.5k
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Comment: C: RNA seq stranded
5.4 years ago by caggtaagtat ★ 1.9k
0
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1
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1.5k
views
Answer: A: RNA seq stranded
5.4 years ago by caggtaagtat ★ 1.9k
0
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0
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3.4k
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Comment: C: Where can I find the reference files for the 1000 Genome project VCF data?
5.4 years ago by caggtaagtat ★ 1.9k
2
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4
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3.4k
views
Where can I find the reference files for the 1000 Genome project VCF data?
VCF 1000 Genome Reference
updated 21 months ago by 3.2k • written 5.4 years ago by ★ 1.9k
0
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1
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1.2k
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Comment: C: Haplotype annotation in VCF file of phase 3 1000 Genome project
5.4 years ago by caggtaagtat ★ 1.9k
4
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3
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1.2k
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Haplotype annotation in VCF file of phase 3 1000 Genome project
SNP VCF Haplotype
updated 5.4 years ago by 16k • written 5.4 years ago by ★ 1.9k
0
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1
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2.0k
views
Comment: C: How to download all premRNA sequences (exons + introns) for human GRCh38 with En
5.4 years ago by caggtaagtat ★ 1.9k
0
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0
replies
1.1k
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Comment: C: How to meassure transcript expression from Oxford nanopore sequencing data
5.4 years ago by caggtaagtat ★ 1.9k
3
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2
replies
1.1k
views
How to meassure transcript expression from Oxford nanopore sequencing data
RNA-Seq Transcript expression nanopore
updated 5.4 years ago by 47k • written 5.4 years ago by ★ 1.9k
0
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0
replies
3.3k
views
Answer: A: Genome index and Aligment with STAR- Rattus Norvegicus
5.5 years ago by caggtaagtat ★ 1.9k
0
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1
reply
1.7k
views
Comment: C: Strand specific in RNA-seq
5.5 years ago by caggtaagtat ★ 1.9k
1
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1
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1.7k
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Answer: A: Strand specific in RNA-seq
5.5 years ago by caggtaagtat ★ 1.9k
0
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0
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3.3k
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Comment: C: Use kallisto with ONT (nanopore) cDNA long reads
5.5 years ago by caggtaagtat ★ 1.9k
0
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0
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4.6k
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Comment: C: Calculate CG content in a fastq file
5.5 years ago by caggtaagtat ★ 1.9k
0
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0
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4.6k
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Comment: C: Calculate CG content in a fastq file
5.5 years ago by caggtaagtat ★ 1.9k
0
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1
reply
4.6k
views
Comment: A: Calculate CG content in a fastq file
5.5 years ago by caggtaagtat ★ 1.9k
0
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0
replies
1.1k
views
Comment: C: Why are file names deleted during submission of RNA-seq data to ENA, after disab
5.5 years ago by caggtaagtat ★ 1.9k
1
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2
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1.1k
views
Why are file names deleted during submission of RNA-seq data to ENA, after disabling editor mode.
RNA-seq ENA FASTQ
5.5 years ago by caggtaagtat ★ 1.9k
1
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0
replies
2.1k
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Answer: A: Detecting antisense RNA in unstranded RNA-Seq data
5.5 years ago by caggtaagtat ★ 1.9k
0
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0
replies
3.1k
views
Comment: C: Calculating significant variance of gene expression across multiple samples
5.5 years ago by caggtaagtat ★ 1.9k
1
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2
replies
3.1k
views
Calculating significant variance of gene expression across multiple samples
RNA-Seq DGE DSEQ2 R
updated 5.5 years ago by 82k • written 5.5 years ago by ★ 1.9k
0
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0
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18k
views
Comment: C: how to get a subset of vcf file for specific SNPs
5.6 years ago by caggtaagtat ★ 1.9k
0
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0
replies
2.5k
views
Answer: A: Finding the start codon
5.6 years ago by caggtaagtat ★ 1.9k
272 results • Page 3 of 6
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