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3
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Answer: A: Using tabix to read a tsv.bgz with genomic coordinate in single column<chromosom
4.9 years ago by finswimmer 16k
5
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4.5k
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Answer: C: Tabix on bed file can't parse
4.9 years ago by finswimmer 16k
11
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Answer: A: extract and generate a VCF file with only "PASS"
4.9 years ago by finswimmer 16k
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Answer: A: Identifying unique SNPs between species
4.9 years ago by finswimmer 16k
2
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Answer: A: Merge VCF files with diploid reference calls in different order for same positio
4.9 years ago by finswimmer 16k
4
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Answer: A: Triplet frequencies in human genome
4.9 years ago by finswimmer 16k
3
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6.8k
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Answer: A: Removing homozygous reference genotypes from multi-sample vcf file
4.9 years ago by finswimmer 16k
2
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2.7k
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Answer: C: snpEff: Fatal error reading file the input VCF files and stop runing
4.9 years ago by finswimmer 16k
2
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2.7k
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Answer: A: tabix to exclude chromosomes from vcf
4.9 years ago by finswimmer 16k
4
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3.8k
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Answer: C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
5.0 years ago by finswimmer 16k
4
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3.5k
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Answer: A: samtools SNP calling
5.0 years ago by finswimmer 16k
3
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675
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Answer: A: awk to organize bed file
5.0 years ago by finswimmer 16k
5
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Answer: A: Merge contigs in fasta file
5.0 years ago by finswimmer 16k
1
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1
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1.7k
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Answer: A: Which reference genome for the annotation of the 1KG variant data by snpEff?
5.0 years ago by finswimmer 16k
1
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1
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1.7k
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Answer: A: Finding if dbSNP type in biomart
5.0 years ago by finswimmer 16k
0
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1
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3.7k
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Answer: Answer: filter unique variants from multiple VCF files
5.0 years ago by finswimmer 16k
0
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764
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Answer: A: How to Deduplicate files
5.0 years ago by finswimmer 16k
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1.2k
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Answer: C: How to pivot pandas dataframe?
5.1 years ago by finswimmer 16k
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1
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4.9k
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Answer: A: How to extract entire info column from VCF file using bcftools
5.1 years ago by finswimmer 16k
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2.3k
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Answer: A: Want to loop through list of BLAST objects in python
5.1 years ago by finswimmer 16k
2
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0
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791
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Answer: A: How to consider/get the g. positions for variants in introns?
5.1 years ago by finswimmer 16k
0
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1.3k
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Answer: A: Should I use the same reference indexing command of bwa for WGS and WES analysis
5.1 years ago by finswimmer 16k
1
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1
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2.4k
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Answer: A: The confused result of samtools sort
5.2 years ago by finswimmer 16k
2
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1.9k
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Answer: A: How to edit fasta header with underscores
5.2 years ago by finswimmer 16k
1
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0
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2.0k
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Answer: A: parse of file multifasta in python
5.2 years ago by finswimmer 16k
1
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2.1k
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Answer: A: Percent reads mapped in Picard
5.2 years ago by finswimmer 16k
2
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15k
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Answer: A: bcftools reheader -h
5.2 years ago by finswimmer 16k
1
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2.7k
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Answer: A: How to extract organisms name from the headers in a multi-fasta file?
5.2 years ago by finswimmer 16k
1
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1
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11k
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Answer: A: how to extract the genomic positions and chromosome number for a list of genes
5.2 years ago by finswimmer 16k
4
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1
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3.9k
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Answer: A: Taking information from a .txt and converting it to fasta
5.2 years ago by finswimmer 16k
6
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1
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2.8k
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Answer: A: Filter Fastq file by seq
5.2 years ago by finswimmer 16k
3
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1
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7.4k
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Answer: A: How to check the presence of mutations of a specific gene in a specific VCF file
5.2 years ago by finswimmer 16k
2
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7.5k
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Answer: A: Creation of a VCF file from scratch with python
5.2 years ago by finswimmer 16k
3
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1
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860
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Answer: C: CYP2D6 Variant Calling
5.2 years ago by finswimmer 16k
4
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0
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7.5k
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Answer: A: how to run freebayes in multi-thread
5.2 years ago by finswimmer 16k
6
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1
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1.8k
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Answer: A: How to get short and sweet gene names/description for gene IDs?
5.2 years ago by finswimmer 16k
2
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1
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2.1k
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Answer: A: How to extract only sequences that contain a specific percentage of Cysteines (
5.3 years ago by finswimmer 16k
2
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1
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1.7k
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Answer: A: removing copy number variations using bcftools
5.3 years ago by finswimmer 16k
1
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1
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1.4k
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Answer: C: combining overlapping vcf's into one
5.3 years ago by finswimmer 16k
0
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1
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4.4k
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Answer: A: How to get number of exons for each transcript in biomart
5.3 years ago by finswimmer 16k
2
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0
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2.2k
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Answer: A: vcf file from gene name and amino acid change
5.3 years ago by finswimmer 16k
2
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1
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2.5k
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Answer: A: why GATK makes things more complicated ?
5.3 years ago by finswimmer 16k
1
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1
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5.1k
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Answer: A: How to extract pattern matching sequences from a fasta file?
updated 5.3 years ago by 47k • written 5.3 years ago by 16k
2
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0
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1.4k
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Answer: A: filter gene expression matrix
5.3 years ago by finswimmer 16k
5
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0
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5.8k
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Answer: A: Keep variants with 0% missing in VCF
5.3 years ago by finswimmer 16k
3
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0
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1.1k
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Answer: A: RS numbers to VCF format -sheep genome
5.3 years ago by finswimmer 16k
4
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0
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5.5k
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Answer: A: Calling SNPs using bcftools mpileup
5.3 years ago by finswimmer 16k
3
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1
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2.4k
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Answer: A: bedtools subtract still overlaps by 1bp?
5.3 years ago by finswimmer 16k
7
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2
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3.5k
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Answer: C: bcftools query missense_variant SNPs from gnomad VCF files
5.3 years ago by finswimmer 16k
5
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2
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8.7k
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Answer: A: Remove not polymorphic sites from VCF
5.3 years ago by finswimmer 16k
416 results • Page 2 of 9
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