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19
votes
8
replies
17k
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6 follow
Best Practices / Faster Samtools Mpileup, Any Tips?
samtools mpileup
updated 3.7 years ago by ▴ 50 • written 11.8 years ago by ▴ 640
1
vote
1
reply
1.6k
views
Comment: C: Protocol for genome assembly of Sars-cov-2 sequences
3.8 years ago by Kevin ▴ 640
0
votes
0
replies
5.1k
views
Comment: C: Bigger Sample Sizes For Wgs Exome. Is Nosql The Way To Go? Or Bio Hdf
updated 4.6 years ago by 43k • written 12.2 years ago by ▴ 640
0
votes
0
replies
4.1k
views
Answer: A: Is There A Tool To Combine Samtools / Sam File Bitwise Flags?
updated 4.6 years ago by 43k • written 12.2 years ago by ▴ 640
3
votes
0
replies
4.1k
views
Answer: A: List Of All Known Regulatory Regions In Human Genome
updated 4.6 years ago by 43k • written 12.9 years ago by ▴ 640
1
vote
0
replies
12k
views
Answer: A: What Is The Most Memory-Efficient De Novo Assembler?
updated 4.6 years ago by 43k • written 13.0 years ago by ▴ 640
0
votes
0
replies
1.4k
views
Comment: A: Mira assembler with IonTorrent
4.8 years ago by Kevin ▴ 640
1
vote
0
replies
1.2k
views
Comment: A: Help in Gwas analysis
5.0 years ago by Kevin ▴ 640
1
vote
0
replies
2.0k
views
Comment: A: parse of file multifasta in python
5.2 years ago by Kevin ▴ 640
0
votes
0
replies
1.8k
views
Answer: A: 16S rRNA classification pipeline
5.3 years ago by Kevin ▴ 640
1
vote
1
reply
2.4k
views
Answer: A: Pool Whole Genome Sequencing
5.7 years ago by Kevin ▴ 640
0
votes
0
replies
5.2k
views
Comment: C: randomly subsampling a bam file three times
6.7 years ago by Kevin ▴ 640
13
votes
3
replies
5.8k
views
Snps In Promoter Regions In Exome Sequencing?
exome promoter next-gen sequencing snp
updated 6.9 years ago by 20 • written 12.9 years ago by ▴ 640
2
votes
3
replies
9.8k
views
Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcftools plink vcf ped
updated 7.2 years ago by • 0 • written 11.9 years ago by ▴ 640
0
votes
0
replies
3.0k
views
Answer: A: Where Can I Find Data Setnormal\Tumor Of Cancer?
7.5 years ago by Kevin ▴ 640
1
vote
1
reply
5.1k
views
How To Create Genome-Wide Estimation Of Ibd Sharing Using Plink From Tped Files?
plink
updated 8.7 years ago by 20 • written 11.9 years ago by ▴ 640
18
votes
27
replies
19k
views
20 follow
Where Can I Download Vcf Files For Publicly Available Data?
vcf snp
updated 13 months ago by 43k • written 12.4 years ago by ▴ 640
1
vote
0
replies
3.9k
views
Answer: A: 10Kb Reads From Illumina Hiseq
10.8 years ago by Kevin ▴ 640
0
votes
1
reply
3.0k
views
Convert Illumina Human Hapmap 550 K Chip Manifest File From B36 To B37
illumina
updated 9 months ago by 43k • written 11.6 years ago by ▴ 640
4
votes
0
replies
20k
views
Answer: A: Bioinformatics "Cheat Sheet"
updated 11.6 years ago by 100k • written 13.1 years ago by ▴ 640
0
votes
1
reply
17k
views
Answer: A: Best Practices / Faster Samtools Mpileup, Any Tips?
11.6 years ago by Kevin ▴ 640
0
votes
0
replies
7.8k
views
Comment: C: Split Bam Files By Region For Parallel Variant Calling
11.7 years ago by Kevin ▴ 640
0
votes
1
reply
4.9k
views
Comment: C: Putting Run/Lane Info Back Into Readgroup For Gatk Pipeline
11.7 years ago by Kevin ▴ 640
2
votes
4
replies
4.9k
views
Putting Run/Lane Info Back Into Readgroup For Gatk Pipeline
gatk bam
updated 11.7 years ago by 26k • written 11.7 years ago by ▴ 640
8
votes
6
replies
4.3k
views
Bwa Aln -Q 15 When To Use It? What Does It Do?
bwa trimming
updated 11.7 years ago by 100k • written 11.8 years ago by ▴ 640
0
votes
0
replies
4.3k
views
Comment: C: Bwa Aln -Q 15 When To Use It? What Does It Do?
11.7 years ago by Kevin ▴ 640
0
votes
0
replies
17k
views
Comment: C: Best Practices / Faster Samtools Mpileup, Any Tips?
11.8 years ago by Kevin ▴ 640
0
votes
1
reply
3.0k
views
Does A Large Variation In Insert Sizes For Paired End Illumina Sequencing Affect Snp Calling?
updated 11.8 years ago by 100k • written 11.8 years ago by ▴ 640
0
votes
0
replies
2.6k
views
Answer: A: Rare Variant Simulation
11.9 years ago by Kevin ▴ 640
12
votes
4
replies
12k
views
Fastest Way To Rename Sample Name In 37 Gb Gzipped Vcf File Or Binary Ped File
vcf ped bed
updated 16 months ago by 43k • written 11.9 years ago by ▴ 640
13
votes
1
reply
28k
views
Answer: A: Is There Any R Or R / Bioconductor Package That Can Make Circular Plots Like Per
12.2 years ago by Kevin ▴ 640
0
votes
2
replies
4.1k
views
Is There A Tool To Combine Samtools / Sam File Bitwise Flags?
samtools
updated 12.2 years ago by ★ 1.0k • written 12.2 years ago by ▴ 640
0
votes
0
replies
5.1k
views
Comment: C: Bigger Sample Sizes For Wgs Exome. Is Nosql The Way To Go? Or Bio Hdf
12.2 years ago by Kevin ▴ 640
0
votes
0
replies
5.5k
views
Comment: C: Concordance Of Ngs Data To Wg Snp Array Data
12.2 years ago by Kevin ▴ 640
0
votes
0
replies
60k
views
Answer: A: How To Efficiently Parse A Huge Fastq File?
12.2 years ago by Kevin ▴ 640
0
votes
0
replies
83k
views
Comment: C: Drawing Chromosome Ideogams With Data
12.2 years ago by Kevin ▴ 640
0
votes
0
replies
20k
views
Comment: C: Bioinformatics "Cheat Sheet"
12.2 years ago by Kevin ▴ 640
20
votes
24
replies
5.1k
views
6 follow
Bigger Sample Sizes For Wgs Exome. Is Nosql The Way To Go? Or Bio Hdf
fastq next-gen sequencing
updated 12.2 years ago by 8.6k • written 12.2 years ago by ▴ 640
0
votes
0
replies
19k
views
Comment: C: Where Can I Download Vcf Files For Publicly Available Data?
12.3 years ago by Kevin ▴ 640
1
vote
0
replies
4.9k
views
Answer: A: Read/Write Throughput Of Bioinformatics Storage
12.4 years ago by Kevin ▴ 640
2
votes
0
replies
30k
views
Answer: A: Human Exome Capture Library Coordinates Download
12.5 years ago by Kevin ▴ 640
16
votes
3
replies
5.0k
views
How To Extract Snps From A Desired List Of Gene Names
disease snp
updated 12.5 years ago by ▴ 490 • written 12.5 years ago by ▴ 640
2
votes
1
reply
4.4k
views
Answer: A: How To Know The Amino Acid Switch That A Snp Caused
updated 13.0 years ago by 11k • written 13.0 years ago by ▴ 640
1
vote
0
replies
11k
views
Answer: A: How Can I Batch Blast Sequences To Identify Them?
13.1 years ago by Kevin ▴ 640
1
vote
2
replies
4.0k
views
Answer: A: Snp Number From Whole-Genome Sequencing
13.1 years ago by Kevin ▴ 640
1
vote
2
replies
72k
views
Answer: A: What Is The Best Pipeline For Human Whole Exome Sequencing?
13.9 years ago by Kevin ▴ 640
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