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David W ♦ 4.7k
Role: Moderator
Status: New
Handle: @David W352
Reputation: 4710
Email: d*********@gmail.com
Joined: 16 months ago
Last seen: 5.0 years ago
Location: New Zealand

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Answer: A: Display Nucleotides As Color
9.1 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
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Comment: C: Very Basic Question: Biopython And Python 3.X
10.2 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
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Answer: A: Multi-Loci Dna Sequence Based Phylogenic Tree
10.3 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
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Answer: A: Code Golf: Mean Length Of Fasta Sequences
10.3 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
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Answer: A: Code Golf: Mean Length Of Fasta Sequences
10.3 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
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Answer: A: Why Would P-Value Histogram Skew Right For Anovas?
7.4 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
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Answer: A: How To Draw Intron Boundaries With Biopython
10.4 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
4
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3.2k
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Answer: A: Phylip App'S Without Emboss Tool
10.4 years ago
David W 4.7k • updated 2.1 years ago
RamRS 21k
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Comment: C: Watterson's estimator "theta"
5.4 years ago
David W 4.7k
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Answer: A: Quickly subsetting VCF while being memory efficient
5.4 years ago
David W 4.7k
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1.6k
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Comment: C: Quickly subsetting VCF while being memory efficient
5.4 years ago
David W 4.7k
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3.2k
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Answer: A: Parse the Xml response from Entrez Db=bioproject Using Biopython eFetch
5.4 years ago
David W 4.7k
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1.9k
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Answer: A: Bedtools: How to save output in Cygwin by creating a bed file?
5.4 years ago
David W 4.7k
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1.9k
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Answer: A: Extract PMIDs from a gene or protein ID
5.5 years ago
David W 4.7k
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Comment: C: GTR always the best model of evolution
5.5 years ago
David W 4.7k
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Answer: A: database that links EntrezGeneIDs and EnsemblIDs
5.5 years ago
David W 4.7k
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Answer: A: R programming question: insert alternately
5.5 years ago
David W 4.7k
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Comment: C: R programming question: insert alternately
5.5 years ago
David W 4.7k
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Answer: C: GGplot adding scales under specific graphs.
5.5 years ago
David W 4.7k
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4.3k
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Comment: C: transpose rows and columns
5.6 years ago
David W 4.7k
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1.3k
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Answer: A: How to plot proportions of syn/nonsynonymous alleles across the chromosome?
5.6 years ago
David W 4.7k
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1.3k
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Comment: C: How to plot proportions of syn/nonsynonymous alleles across the chromosome?
5.6 years ago
David W 4.7k
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Comment: C: have anybody used DOSE package in R ??
5.6 years ago
David W 4.7k
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988
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Answer: A: Publishing improved versions of algorithms - ethics and norms.
5.6 years ago
David W 4.7k
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1.1k
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Answer: A: Is there a way to filter out files by a taxon and a tissue in SRAdb?
5.6 years ago
David W 4.7k
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1.9k
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Comment: C: Alternative to MrBayes for BI phylogenetics?
5.6 years ago
David W 4.7k
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1.2k
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Comment: C: Permuation-tail probability (PTP) test for an evolutionary signal
5.6 years ago
David W 4.7k
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1.5k
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Answer: A: construct a phylogenetic tree from a set of local trees
5.7 years ago
David W 4.7k
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1.5k
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Comment: C: construct a phylogenetic tree from a set of local trees
5.7 years ago
David W 4.7k
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Answer: A: Reduce saturation by deleting the 3rd position in each codon of DNA seqs. R ape
5.7 years ago
David W 4.7k
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Comment: C: Biopython: qBLAST only retrieving 50 hits, inserting "hitlist_size=100" does not
5.7 years ago
David W 4.7k
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1.4k
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Answer: A: Biopython: qBLAST only retrieving 50 hits, inserting "hitlist_size=100" does not
5.7 years ago
David W 4.7k
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2.1k
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Answer: A: R package for Bayesian phylogenetics
5.7 years ago
David W 4.7k
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Answer: A: Obtaining NCBI GI Numbers from Taxonomy ID (for Entrez efetch query)
5.7 years ago
David W 4.7k
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3.5k
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Comment: C: how to convert NCBI protein ID to corresponding nucleotide sequence
5.7 years ago
David W 4.7k
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Answer: A: how to convert NCBI protein ID to corresponding nucleotide sequence
5.7 years ago
David W 4.7k
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Comment: C: Which program can analyze character evolution
5.7 years ago
David W 4.7k
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Answer: A: Which program can analyze character evolution
5.7 years ago
David W 4.7k
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Answer: A: Phylogenetic analysis using concatenated protein sequences and different best mo
5.8 years ago
David W 4.7k
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2.1k
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Answer: A: Randomised subsetting of sequences in a fasta file using R
5.8 years ago
David W 4.7k
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9.3k
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Comment: C: Error: unable to open file or unable to determine types for file bed file
5.8 years ago
David W 4.7k
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2.5k
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Comment: C: Pegas import fasta and calculate theta
5.8 years ago
David W 4.7k
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2.5k
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Comment: C: Pegas import fasta and calculate theta
5.8 years ago
David W 4.7k
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2.5k
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Answer: A: Pegas import fasta and calculate theta
5.8 years ago
David W 4.7k
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Comment: C: Per chromosome gVCF
5.8 years ago
David W 4.7k
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2.1k
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Answer: A: Per chromosome gVCF
5.8 years ago
David W 4.7k
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Answer: A: Subsetting a fasta file using seqinr
5.8 years ago
David W 4.7k
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Answer: A: BETA(direction of effect) sign flipping based on the coded allele - when doing m
5.9 years ago
David W 4.7k
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Answer: A: How to calculate sum of branch lengths between specified leaves from a Newick tr
5.9 years ago
David W 4.7k
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Comment: C: Terminology question: Phylogenetic tree duplicated generation counts
5.9 years ago
David W 4.7k
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1.4k
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Comment: C: Terminology question: Phylogenetic tree duplicated generation counts
5.9 years ago
David W 4.7k
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Answer: A: Terminology question: Phylogenetic tree duplicated generation counts
5.9 years ago
David W 4.7k
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1.4k
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Comment: C: Terminology question: Phylogenetic tree duplicated generation counts
5.9 years ago
David W 4.7k
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Comment: C: threshold of bonferroni-corrected p-value
5.9 years ago
David W 4.7k
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Comment: C: detection of positive selection in population using Tajima's n Fu Li test
5.9 years ago
David W 4.7k
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Answer: A: detection of positive selection in population using Tajima's n Fu Li test
5.9 years ago
David W 4.7k
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Answer: A: split supermatrix by gene
5.9 years ago
David W 4.7k
2
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2.5k
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Comment: C: merge two csv files in r (gene to protein pathways)
5.9 years ago
David W 4.7k
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Comment: C: why does my paup4 run end with error "Error(#314): Character type "2 1" is unrec
5.9 years ago
David W 4.7k
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Answer: A: why does my paup4 run end with error "Error(#314): Character type "2 1" is unrec
5.9 years ago
David W 4.7k
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Comment: C: Difference between UPGMA and the NJ
5.9 years ago
David W 4.7k
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2.4k
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Comment: C: PSMC using haploid genomes
5.9 years ago
David W 4.7k
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3.9k
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Comment: C: Extract sequences from Class DNAbin
5.9 years ago
David W 4.7k
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3.9k
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Answer: A: Extract sequences from Class DNAbin
5.9 years ago
David W 4.7k
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3.9k
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Comment: C: Extract sequences from Class DNAbin
5.9 years ago
David W 4.7k
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Answer: A: VCF + Phylogenetic tree : how to calculate the distance between two set of sampl
5.9 years ago
David W 4.7k
4
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4.4k
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Comment: C: What is trace in R's heatmap.2 function?
6.0 years ago
David W 4.7k • updated 6.0 years ago
Devon Ryan 90k
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Comment: C: What is trace in R's heatmap.2 function?
6.0 years ago
David W 4.7k
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Answer: A: How to represent multiple p-values ?
6.0 years ago
David W 4.7k
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Answer: A: How to programmatically get GEO accession number ID
6.0 years ago
David W 4.7k • updated 6.0 years ago
RamRS 21k
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Answer: A: help with SNP analysis
6.0 years ago
David W 4.7k
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Comment: C: The meaning of the neutral theory of evolution
6.0 years ago
David W 4.7k
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1.6k
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Comment: C: The meaning of the neutral theory of evolution
6.0 years ago
David W 4.7k
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1.6k
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Answer: A: The meaning of the neutral theory of evolution
6.1 years ago
David W 4.7k
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2.9k
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Answer: A: After Clustal analysis and MEGA analysis how can I obtain the probable ancestor
6.1 years ago
David W 4.7k
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1.7k
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Comment: C: SNP plotting from VCF file in non database organism
6.1 years ago
David W 4.7k
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3.3k
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Comment: C: How to write effective and stable bioinformatics pipeline in R ?
6.1 years ago
David W 4.7k
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Comment: C: How to write effective and stable bioinformatics pipeline in R ?
6.1 years ago
David W 4.7k
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Answer: A: Distance matrix with different length sequences - novice question
6.1 years ago
David W 4.7k
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4.6k
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
6.1 years ago
David W 4.7k
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Answer: A: How to use seek() with Biopython SeqIO object
6.1 years ago
David W 4.7k
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1.6k
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Comment: C: How to Write a loop for a big matrix?
6.1 years ago
David W 4.7k
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1.6k
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Comment: C: How to Write a loop for a big matrix?
6.1 years ago
David W 4.7k
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1.6k
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Comment: C: How to Write a loop for a big matrix?
6.2 years ago
David W 4.7k
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1.4k
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Answer: A: Outgroup from command line
6.2 years ago
David W 4.7k
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Comment: C: Problems installing samtools on linux (make command)
6.2 years ago
David W 4.7k
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18k
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Answer: A: Problems installing samtools on linux (make command)
6.2 years ago
David W 4.7k
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Answer: A: sequence evolution simulator
6.2 years ago
David W 4.7k
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3.5k
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Comment: C: Bootsrapped tree from a distance matrix
6.2 years ago
David W 4.7k
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Comment: C: Bootsrapped tree from a distance matrix
6.2 years ago
David W 4.7k
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Answer: A: Is it possible to use Lositan for one population?
6.2 years ago
David W 4.7k
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Answer: A: Genpop file format for LOSITAN
6.2 years ago
David W 4.7k
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Answer: A: Selection from population data
6.2 years ago
David W 4.7k
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Comment: C: Concatenate SNPs for phylogenetic
6.2 years ago
David W 4.7k
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3.0k
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Comment: C: Concatenate SNPs for phylogenetic
6.3 years ago
David W 4.7k
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3.0k
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Comment: C: Concatenate SNPs for phylogenetic
6.3 years ago
David W 4.7k
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Comment: C: Concatenate SNPs for phylogenetic
6.3 years ago
David W 4.7k
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Comment: C: R graphs without bar
6.3 years ago
David W 4.7k
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Comment: C: fisher test with multiple samples
6.3 years ago
David W 4.7k
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2.6k
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Comment: C: fisher test with multiple samples
6.3 years ago
David W 4.7k
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