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John ♦ 12k
Role: Moderator
Status: New
Handle: @John3139
Reputation: 12180
Joined: 20 months ago
Last seen: 2.0 years ago
Location: Germany

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2
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4.0k
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Answer: A: Checking fastq is valid
4.1 years ago
John 12k • updated 21 months ago
RamRS 21k
1
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1
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1.1k
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Calling SNPs on Bisulphite Data
bissnp GATK
5.2 years ago
John 12k • updated 2.4 years ago
CEB • 0
2
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0
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1.2k
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Answer: A: BAM files for RRBS data in ENCODE Project
5.0 years ago
John 12k • updated 2.4 years ago
RamRS 21k
1
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0
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1.6k
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Answer: A: Sort Sequences In A Fasta File According To The peg List
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
2
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0
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1.1k
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Answer: A: "Good" epigenetic histone modification ChIP-seq datasets
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
2
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0
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1.9k
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Answer: A: Check BAMs are complete and clean
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
0
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0
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1.9k
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Comment: C: Check BAMs are complete and clean
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
7
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6
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1.4k
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Is there an authoritative source for optional BAM tags?
BAM Duplicates MarkDuplicates Picard
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
1
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1
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1.4k
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Answer: A: Is there an authoritative source for optional BAM tags?
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
0
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1
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1.4k
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Comment: C: Is there an authoritative source for optional BAM tags?
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
0
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1
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4.0k
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Comment: C: Questions about multithreading of BWA
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
1
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0
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8.9k
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Answer: A: Check if BAM is derived from pair-end or single-end reads?
4.7 years ago
John 12k • updated 2.5 years ago
RamRS 21k
0
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0
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2.2k
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Comment: C: split bed file into several bed files where each region is separated of any othe
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
0
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1
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2.2k
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Comment: C: split bed file into several bed files where each region is separated of any othe
5.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
0
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0
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27k
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Answer: A: How To Get Number Of Reads In Bam File Efficiently In Python?
6.0 years ago
John 12k • updated 2.5 years ago
RamRS 21k
2
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1
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5.9k
Views
Answer: A: cannot import pysam. Module has no attribute error
5.2 years ago
John 12k • updated 2.5 years ago
RamRS 21k
0
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0
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2.3k
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Comment: C: BQSR: when it is applicable?
3.3 years ago
John 12k
1
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1
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2.3k
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Comment: C: BQSR: when it is applicable?
3.3 years ago
John 12k
0
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0
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2.3k
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Comment: C: BQSR: when it is applicable?
3.3 years ago
John 12k
0
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0
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845
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Comment: C: How to tell if a FastQ file is a concatinate of 2 seperate illumina runs?
3.3 years ago
John 12k
0
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1
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845
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Comment: C: How to tell if a FastQ file is a concatinate of 2 seperate illumina runs?
3.3 years ago
John 12k
1
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2
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2.3k
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Comment: C: BQSR: when it is applicable?
3.3 years ago
John 12k
0
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0
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967
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Answer: A: Is there any disease mainly caused by underexpression or overexpression of some
3.4 years ago
John 12k
2
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0
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5.9k
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Answer: A: Meaning of BWA-MEM MAPQ values
3.4 years ago
John 12k
0
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0
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3.2k
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Comment: C: Amzon EC2 for bioinformatics, genomics, NGS analysis
3.5 years ago
John 12k
0
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1
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2.2k
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Comment: C: Declining quality of biostars
3.6 years ago
John 12k
0
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0
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2.3k
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Comment: C: BAM to CRAM to BAM
3.6 years ago
John 12k
11
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6
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1.3k
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In-place writable BAM files
bgzip bam
5.0 years ago
John 12k • updated 3.6 years ago
Biostar 20
0
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0
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36k
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Comment: C: samtools sorting and indexing
3.7 years ago
John 12k
0
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0
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36k
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Comment: C: samtools sorting and indexing
3.7 years ago
John 12k
12
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2
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36k
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Answer: A: samtools sorting and indexing
3.7 years ago
John 12k
0
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2
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2.2k
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Comment: C: Declining quality of biostars
3.7 years ago
John 12k
1
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0
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1.4k
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Comment: C: SAM file size after STAR alignment
3.7 years ago
John 12k
3
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1
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1.3k
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Comment: C: Where and how NGS techniques are heading for the next 5 years?
3.7 years ago
John 12k
2
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1
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5.6k
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Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
3.7 years ago
John 12k
0
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0
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5.6k
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Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
3.7 years ago
John 12k
0
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1
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5.6k
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Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
3.7 years ago
John 12k
1
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0
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5.6k
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Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
3.7 years ago
John 12k
0
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1
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5.6k
Views
Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
3.7 years ago
John 12k
4
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2
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5.6k
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Answer: A: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
3.7 years ago
John 12k
2
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3
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5.6k
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Comment: C: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
3.7 years ago
John 12k
0
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0
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2.0k
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Comment: C: Preparation for Bioinformatics.SE closing
3.7 years ago
John 12k
0
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0
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2.0k
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Comment: C: Preparation for Bioinformatics.SE closing
3.7 years ago
John 12k
0
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0
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1.3k
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Answer: C: Keeping Tags That Are Mapped To The Same Place By Two Aligners
3.7 years ago
John 12k
2
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1
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2.0k
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Comment: C: Why bioinformaticians need to know programming languages?
3.7 years ago
John 12k
2
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0
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2.0k
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Comment: C: Why bioinformaticians need to know programming languages?
3.7 years ago
John 12k
0
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1
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2.0k
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Comment: C: Why bioinformaticians need to know programming languages?
3.7 years ago
John 12k
2
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1
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2.0k
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Answer: A: Why bioinformaticians need to know programming languages?
3.7 years ago
John 12k
69
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39
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2.0k
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14 follow
Forum: Preparation for Bioinformatics.SE closing
biostars Forum
3.8 years ago
John 12k • updated 3.8 years ago
me • 690
0
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0
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2.0k
Views
Comment: C: Preparation for Bioinformatics.SE closing
3.8 years ago
John 12k
1,090 results • Page 1 of 22
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