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Comment: Comment: Is there a tool that will tell me how "complex" (e.g., number of unique k-mers)
2.2 years ago by O.rka ▴ 720
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Comment: Comment: Is there a tool that will tell me how "complex" (e.g., number of unique k-mers)
2.3 years ago by O.rka ▴ 720
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Comment: Comment: Where can I find an annotation table for human gencode ensemble gene ids to gene
2.3 years ago by O.rka ▴ 720
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Comment: Comment: featureCounts isoform vs gene summarization
2.3 years ago by O.rka ▴ 720
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Comment: Comment: Any alternatives to BBMap's clumpify.sh program to optimize gzip compression?
2.4 years ago by O.rka ▴ 720
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Comment: Comment: Any alternatives to BBMap's clumpify.sh program to optimize gzip compression?
2.4 years ago by O.rka ▴ 720
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Comment: Comment: How to get consensus annotations for a de novo orthogroup/ortholog analysis?
2.4 years ago by O.rka ▴ 720
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Comment: Comment: How to get consensus annotations for a de novo orthogroup/ortholog analysis?
2.4 years ago by O.rka ▴ 720
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Comment: Comment: How can I test whether a treatment truncates transcript length using transcripto
2.4 years ago by O.rka ▴ 720
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Comment: Comment: How to download BBTools sketch databases using fetchRefSeq?
2.6 years ago by O.rka ▴ 720
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1.1k
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Comment: Comment: How to download BBTools sketch databases using fetchRefSeq?
2.6 years ago by O.rka ▴ 720
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Comment: Comment: BBSketch - A Tool for Rapid Sequence Comparison
2.6 years ago by O.rka ▴ 720
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Comment: Comment: Recommended approach for building phylogenetic tree from de novo metagenomes
2.6 years ago by O.rka ▴ 720
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Comment: Comment: How To Add Specific Word To Fasta Header
2.6 years ago by O.rka ▴ 720
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Comment: Comment: Recommended approach for building phylogenetic tree from de novo metagenomes
2.6 years ago by O.rka ▴ 720
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Comment: Comment: How to compute module completion ratio of KEGG modules from KO identifiers? (com
2.7 years ago by O.rka ▴ 720
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Comment: Comment: Would you use HMMSCAN or HMMSEARCH when the query is much larger than the databa
2.8 years ago by O.rka ▴ 720
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Comment: Comment: Is it possible to get taxonomy identifiers from diamond output without using --t
2.8 years ago by O.rka ▴ 720
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1.3k
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Comment: Comment: How do you split metagenomic bins/MAGs into eukaryotic and prokaryotic?
2.8 years ago by O.rka ▴ 720
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717
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Comment: Comment: What is the best short reader to very large reference fasta?
2.9 years ago by O.rka ▴ 720
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717
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Comment: Comment: What is the best short reader to very large reference fasta?
2.9 years ago by O.rka ▴ 720
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Comment: Comment: How to calculate differential methylation from nanopore reads?
3.0 years ago by O.rka ▴ 720
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2.2k
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Comment: Comment: How to calculate differential methylation from nanopore reads?
3.0 years ago by O.rka ▴ 720
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1.4k
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Comment: Comment: How to structure my edgeR model to incorporate a temporal variable and 2 categor
3.0 years ago by O.rka ▴ 720
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1.4k
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Comment: Comment: How to structure my edgeR model to incorporate a temporal variable and 2 categor
3.1 years ago by O.rka ▴ 720
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1.4k
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Comment: Comment: How to structure my edgeR model to incorporate a temporal variable and 2 categor
3.1 years ago by O.rka ▴ 720
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Comment: C: How to compute the "completeness" of a KEGG module using a set of KEGG orthologs
3.2 years ago by O.rka ▴ 720
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Comment: C: How to get a mapping between KEGG module and KEGG orthologs?
3.2 years ago by O.rka ▴ 720
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2.0k
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Comment: C: How to get a mapping between KEGG module and KEGG orthologs?
3.2 years ago by O.rka ▴ 720
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1.6k
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Comment: C: How can I run "gene set enrichment" (not necessarily GSEA) with only one conditi
3.2 years ago by O.rka ▴ 720
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6.7k
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Comment: C: WGCNA soft-threshold power selection
3.4 years ago by O.rka ▴ 720
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1.7k
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Comment: C: How to create vcf file with SNPs bed file and sorted bam file?
3.5 years ago by O.rka ▴ 720
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1.7k
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Comment: C: How to create vcf file with SNPs bed file and sorted bam file?
3.5 years ago by O.rka ▴ 720
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1.7k
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Comment: C: How to create vcf file with SNPs bed file and sorted bam file?
3.5 years ago by O.rka ▴ 720
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3.3k
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Comment: C: metabat installation problem with conda
3.5 years ago by O.rka ▴ 720
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1.6k
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Comment: C: How to find all mapped locations of a read from PySam?
3.8 years ago by O.rka ▴ 720
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2.2k
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Comment: C: Why is hmmsearch only using the 1st HMM in a concatenated HMM database?
4.1 years ago by O.rka ▴ 720
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2.2k
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Comment: C: Why is hmmsearch only using the 1st HMM in a concatenated HMM database?
4.1 years ago by O.rka ▴ 720
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4.7k
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Comment: C: How to choose between --cut_ga, --cut_tc, and --cut_nc in hmmsearch? (hmmer)
4.1 years ago by O.rka ▴ 720
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4.7k
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Comment: C: How to choose between --cut_ga, --cut_tc, and --cut_nc in hmmsearch? (hmmer)
4.1 years ago by O.rka ▴ 720
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4.7k
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Comment: C: How to choose between --cut_ga, --cut_tc, and --cut_nc in hmmsearch? (hmmer)
4.1 years ago by O.rka ▴ 720
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Comment: C: How to get "best" taxon identifier from diamond output with staxids?
4.1 years ago by O.rka ▴ 720
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3.4k
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Comment: C: BLAST multiple staxids
4.1 years ago by O.rka ▴ 720
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3.6k
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Comment: C: How can I get taxonomy identifiers (staxids) using diamond? (Error: Invalid outp
4.1 years ago by O.rka ▴ 720
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13k
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Comment: C: nr database Diamond
4.1 years ago by O.rka ▴ 720
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1.9k
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Comment: C: How can I transfer gene models to a new assembly?
4.2 years ago by O.rka ▴ 720
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1.9k
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Comment: C: How can I transfer gene models to a new assembly?
4.2 years ago by O.rka ▴ 720
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1.9k
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Comment: C: How can I transfer gene models to a new assembly?
4.2 years ago by O.rka ▴ 720
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6.5k
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Comment: C: Is it possible to get taxonomy identifiers from diamond output without using --t
4.3 years ago by O.rka ▴ 720
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11k
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Comment: C: Why is `send` lower than `sstart` from blast format 6 output?
4.3 years ago by O.rka ▴ 720
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