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Answer:
Answer: quantify counts from sorted bam files using a bed file containing regions of in
2.1 years ago by
Jeffin Rockey
★ 1.3k
1
vote
1
reply
1.1k
views
Answer:
A: Change the field separator
3.8 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
1.1k
views
Answer:
A: How to remove all characters after a specific pattern?
updated 4.7 years ago by
finswimmer
16k • written 4.7 years ago by
Jeffin Rockey
★ 1.3k
1
vote
1
reply
1.6k
views
Answer:
A: Bowtie Index building for wheat genome
5.2 years ago by
Jeffin Rockey
★ 1.3k
2
votes
3
replies
3.4k
views
Answer:
A: How to extract filename and change text in the same file
5.2 years ago by
Jeffin Rockey
★ 1.3k
3
votes
1
reply
4.0k
views
Answer:
A: bowtie2 can't find index
5.4 years ago by
Jeffin Rockey
★ 1.3k
3
votes
2
replies
3.7k
views
Answer:
A: To obtain upstream DNA sequence by giving location
5.4 years ago by
Jeffin Rockey
★ 1.3k
1
vote
1
reply
1.5k
views
Answer:
A: How to change the path so that screen can take the default python path?
5.4 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
3.1k
views
Answer:
C: ddRAD analysis pipelines
5.6 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
2.5k
views
Answer:
A: Error in cutadapt installation
5.6 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
8.8k
views
Answer:
A: gff3 to bed12
5.6 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
2.9k
views
Answer:
A: gffread error when converting gff to gtf
5.7 years ago by
Jeffin Rockey
★ 1.3k
1
vote
1
reply
3.8k
views
Answer:
A: Problem with Bedtools
5.8 years ago by
Jeffin Rockey
★ 1.3k
1
vote
0
replies
1.5k
views
Answer:
A: Bedtools Slop for Specific Features
5.8 years ago by
Jeffin Rockey
★ 1.3k
3
votes
0
replies
2.0k
views
Answer:
A: Location of intronic SNPs from exons
5.8 years ago by
Jeffin Rockey
★ 1.3k
1
vote
0
replies
4.6k
views
Answer:
A: install some bioinformatic sofwares without root
5.8 years ago by
Jeffin Rockey
★ 1.3k
1
vote
1
reply
6.1k
views
Answer:
A: STAR-RNA Segmentation Fault
5.9 years ago by
Jeffin Rockey
★ 1.3k
4
votes
0
replies
11k
views
Answer:
A: converting .gff file to .gtf
5.9 years ago by
Jeffin Rockey
★ 1.3k
0
votes
1
reply
1.3k
views
Answer:
A: Find reads that completely cover short sequences
6.2 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
3.2k
views
Answer:
A: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
6.2 years ago by
Jeffin Rockey
★ 1.3k
3
votes
1
reply
3.6k
views
Answer:
A: bedtools getfasta for mm9 genome
6.2 years ago by
Jeffin Rockey
★ 1.3k
1
vote
0
replies
4.8k
views
Answer:
A: How can I get Transcript ID from the gene ID?
6.7 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
3.2k
views
Answer:
A: Error when installing cufflinks
6.9 years ago by
Jeffin Rockey
★ 1.3k
2
votes
0
replies
2.1k
views
Answer:
A: to much time for using cufflinks
6.9 years ago by
Jeffin Rockey
★ 1.3k
4
votes
1
reply
4.8k
views
Answer:
A: Faster way to get coverage per base
7.1 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
2.7k
views
Answer:
A: From GTF file to GFF file (searching for all 5'UTRs, multiple UTRs per transcrip
7.2 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
6.6k
views
Answer:
A: CONVERT GFF TO GTF
7.3 years ago by
Jeffin Rockey
★ 1.3k
1
vote
1
reply
2.8k
views
Answer:
A: BAM to fastq with Tophat aligned files
7.3 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
1.7k
views
Answer:
A: intersectBed - multiple intersections
7.3 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
15k
views
Answer:
A: Converting from BED to SAF/GFF
7.4 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
2.7k
views
Answer:
A: coverage on exons with bedtools genomecov
updated 7.4 years ago by
GenoMax
141k • written 7.4 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
6.9k
views
Answer:
A: Extract exon and splice site information from gff files for HISAT analysis
7.4 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
2.2k
views
Answer:
A: Extraction of Intergenic Regions and Features from Gene Coordinates and Gene Det
7.5 years ago by
Jeffin Rockey
★ 1.3k
2
votes
0
replies
7.3k
views
Answer:
A: Script to sort bam file not working
7.5 years ago by
Jeffin Rockey
★ 1.3k
1
vote
0
replies
16k
views
Answer:
A: Tophat error: missing .bt2l but I only have .bt2 files
7.5 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
1.5k
views
Answer:
A: Mapping /Need software
7.5 years ago by
Jeffin Rockey
★ 1.3k
1
vote
0
replies
4.1k
views
Answer:
A: Recommended doc for interpreting STAR alignment stats
7.5 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
1.2k
views
Answer:
A: Quick question about Cuffdiff assembly option
7.6 years ago by
Jeffin Rockey
★ 1.3k
1
vote
0
replies
5.2k
views
Answer:
A: CNV caller software
7.6 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
2.6k
views
Answer:
A: RNA-seq for bacteria
7.6 years ago by
Jeffin Rockey
★ 1.3k
1
vote
0
replies
2.3k
views
Answer:
A: Cuffflinks installation problem
updated 7.6 years ago by
GenoMax
141k • written 7.6 years ago by
Jeffin Rockey
★ 1.3k
2
votes
0
replies
2.8k
views
Answer:
A: parsing through gtf file
7.7 years ago by
Jeffin Rockey
★ 1.3k
0
votes
0
replies
2.3k
views
Answer:
A: How to find % alignment of total reads to genic region?
7.7 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
4.0k
views
Answer:
A: Maximum spliced alignment overhang in STAR output
7.7 years ago by
Jeffin Rockey
★ 1.3k
25
votes
2
replies
34k
views
Answer:
A: SAM FLAG for primary alignments, secondary alignments and what's their relations
7.7 years ago by
Jeffin Rockey
★ 1.3k
0
votes
1
reply
4.4k
views
Answer:
A: Mapping with Tophat
7.8 years ago by
Jeffin Rockey
★ 1.3k
2
votes
1
reply
4.2k
views
Answer:
A: Analyzing types of Junctions from BAM and GTF files
7.9 years ago by
Jeffin Rockey
★ 1.3k
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