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Answer: Answer: Before or after LD clumping for PRS calculation in GWAS
6 weeks ago by Sam ★ 4.7k
0
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0
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404
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Answer: Answer: Interpretation of PRS scores calculated from PGS Catalog
12 weeks ago by Sam ★ 4.7k
4
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0
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599
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Answer: Answer: Does anyone know which tool can I use to generate the chart in the picture?
6 months ago by Sam ★ 4.7k
2
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1
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667
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Answer: Answer: Calculating height prediction from PGS
3 months ago by Sam ★ 4.7k
1
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0
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636
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Answer: Answer: Genetic risk score calculated using SNPs with mixed effect directions
14 months ago by Sam ★ 4.7k
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0
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863
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Answer: Answer: Manual Polygenic Risk Score calculation
15 months ago by Sam ★ 4.7k
0
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0
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752
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Answer: Answer: PLINK - tutorial - PRS calculation
17 months ago by Sam ★ 4.7k
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0
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795
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Answer: Answer: instead of linear regression, do logistic regression plink prs tutorial.
17 months ago by Sam ★ 4.7k
2
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0
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528
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Answer: Answer: Get variant type from genotype data
18 months ago by Sam ★ 4.7k
3
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1
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941
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Answer: Answer: PRSice-2 Documentation
18 months ago by Sam ★ 4.7k
4
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1
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1.3k
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Answer: Answer: What is the best way to read PLINK .raw format files into R?
18 months ago by Sam ★ 4.7k
0
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0
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793
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Answer: Answer: PRSice: Error in getopt(spec = spec, opt = args) : long flag "cov" is ambiguous
19 months ago by Sam ★ 4.7k
2
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1
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567
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Answer: Answer: Number of SNPs included in the PRS calculation (PRSice)
2.0 years ago by Sam ★ 4.7k
1
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1
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731
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Answer: Answer: PRSice clumping was not processed for almost 9 hours with a stopped progress rat
2.1 years ago by Sam ★ 4.7k
1
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1
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674
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Answer: Answer: Polygenic risk scores from different GWAS studies
2.1 years ago by Sam ★ 4.7k
2
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1
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1.1k
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Answer: Answer: Help a beginner, results from plink logistic regression don't seem to make sense
updated 13 months ago by 43k • written 2.2 years ago by ★ 4.7k
3
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0
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849
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Answer: Answer: PLINK dosage gives some "NA"s for dichotomic and continuous outcome after analys
2.2 years ago by Sam ★ 4.7k
0
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1
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983
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Answer: Answer: How do I use PLINK to filter out SNPs?
2.2 years ago by Sam ★ 4.7k
3
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1
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1.5k
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Answer: Answer: Merge Score in plink
2.3 years ago by Sam ★ 4.7k
2
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1
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1.6k
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Answer: Answer: How to open the genotype information in a bed file in R or Ubuntu
2.3 years ago by Sam ★ 4.7k
0
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1
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2.5k
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Answer: Answer: Clumping error Plink
2.3 years ago by Sam ★ 4.7k
2
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0
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634
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Answer: Answer: Difference between LDpred1,PT+Clump,Lassosum methods
2.3 years ago by Sam ★ 4.7k
3
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1
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1.7k
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Answer: Answer: Polygenic Risk Score Calculation: Do we need to apply the same p-value threshold
2.3 years ago by Sam ★ 4.7k
1
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3
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3.8k
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Answer: Answer: How to add phenotypic data to .fam in plink (specifically, assign 1 and 2 to cas
2.4 years ago by Sam ★ 4.7k
2
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0
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784
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Answer: Answer: Liftover using gVCF
2.4 years ago by Sam ★ 4.7k
1
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0
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774
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Answer: Answer: How can I make sure certain SNPs are not removed during the clumping stage of PR
2.4 years ago by Sam ★ 4.7k
0
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1
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1.8k
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Answer: Answer: Polygenetic Risk Score Calculation
2.4 years ago by Sam ★ 4.7k
1
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0
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3.6k
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Answer: Answer: nextflow DSL2: best practice to design and reuse a process/worfklow
2.4 years ago by Sam ★ 4.7k
2
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1
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2.6k
views
Answer: Answer: Calculating polygenic score using plink
2.4 years ago by Sam ★ 4.7k
2
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1
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1.6k
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Answer: Answer: Many SNPs getting excluded during PRSice 2 analysis
2.4 years ago by Sam ★ 4.7k
2
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0
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962
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Answer: Answer: PRSice 2 results
2.4 years ago by Sam ★ 4.7k
0
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0
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1.1k
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Answer: Answer: How to analyze genotype data and imputed data in GWAS study
2.5 years ago by Sam ★ 4.7k
2
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1
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1.1k
views
Answer: Answer: Getting error at the clumping stage of PRSice 2
2.5 years ago by Sam ★ 4.7k
2
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1
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924
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Answer: Answer: Polygenic scores in diabetic individuals across UKBB
2.5 years ago by Sam ★ 4.7k
5
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1
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2.5k
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Answer: Answer: how to improve PCA visualization using ggplot?
2.5 years ago by Sam ★ 4.7k
2
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1
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1.6k
views
Answer: Answer: (LDSC) - Munge Error - ValueError: could not convert string to float: OR
2.5 years ago by Sam ★ 4.7k
2
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1
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3.1k
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Answer: Answer: PRSice 2
2.5 years ago by Sam ★ 4.7k
0
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0
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588
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Answer: Answer: Using IMPUTED genotype data from UK Biobank to generate PRS scores using PRSice
2.5 years ago by Sam ★ 4.7k
1
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0
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692
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Answer: Answer: shell --- while
2.5 years ago by Sam ★ 4.7k
0
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0
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1.0k
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Answer: Answer: shell --array in while loop
2.5 years ago by Sam ★ 4.7k
2
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1
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1.0k
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Answer: Answer: PRS from a dataset on which the GWAS is based on
2.6 years ago by Sam ★ 4.7k
0
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0
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4.1k
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Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Sam ★ 4.7k
2
votes
0
replies
798
views
Answer: Answer: Remove text and add a string in odd rows in a fasta file using awk
2.6 years ago by Sam ★ 4.7k
1
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1
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1.0k
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Answer: Answer: Polygenic Risk Score Plot
2.7 years ago by Sam ★ 4.7k
1
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0
replies
1.0k
views
Answer: Answer: extracting a gene from a gmt file
2.7 years ago by Sam ★ 4.7k
1
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1
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717
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Answer: Answer: PLINK ASSOC understanding the results
2.7 years ago by Sam ★ 4.7k
0
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1
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5.1k
views
Answer: Answer: Trying to read multiple CSV files in a folder and add filename to each column in
2.8 years ago by Sam ★ 4.7k
2
votes
1
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2.3k
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Answer: Answer: How to replace multiple string columns to binary values (0 and 1) in a dataframe
2.8 years ago by Sam ★ 4.7k
2
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1
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2.0k
views
Answer: Answer: color coded PCA plot in R for a combined set
2.8 years ago by Sam ★ 4.7k
0
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1
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3.1k
views
Answer: Answer: How to calculate R2 from GWAS summary statistics?
2.8 years ago by Sam ★ 4.7k
201 results • Page 1 of 5
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