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Showing :
answers
1
vote
1
reply
2.3k
views
Answer:
A: error in the location of chromosomes (bam files) - ncRNA ref (alignament tophat)
7.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
2.8k
views
Answer:
A: downloading many sra files for single cell analysis
7.6 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
2.1k
views
Answer:
A: Cuffdiff promoter.diff is empty
7.6 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
1.7k
views
Answer:
A: What to merge with cuffmerge?
7.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
5.7k
views
Answer:
A: Using not significant differentially expressed genes
7.6 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
11k
views
Answer:
A: cutadapt for trimming reads to specific length
7.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.2k
views
Answer:
A: no XLOC gene_id or TCONS transcript_id in fpkm_tracking files
7.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
3.9k
views
Answer:
A: Differential isoform expression analyses
7.6 years ago by
Satyajeet Khare
★ 1.6k
4
votes
1
reply
2.7k
views
Answer:
A: SRA to fastq
7.6 years ago by
Satyajeet Khare
★ 1.6k
5
votes
1
reply
15k
views
Answer:
A: Bowtie2-output to file
7.6 years ago by
Satyajeet Khare
★ 1.6k
3
votes
1
reply
2.4k
views
Answer:
A: Error while building index for ecoli referenc genome
7.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
1.5k
views
Answer:
C: X Chromsome Silencing
7.7 years ago by
Satyajeet Khare
★ 1.6k
3
votes
0
replies
8.5k
views
Answer:
C: What's the difference between EGA, ENA, GEO, SRA and ArrayExpress
7.7 years ago by
Satyajeet Khare
★ 1.6k
3
votes
1
reply
1.9k
views
Answer:
C: why we performed cufflinks and what does the assembled transcripts mean?
7.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
1.4k
views
Answer:
A: Drosophila differential expression.
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
2.6k
views
Answer:
A: how to calculaute Tissue Specificity of genes
7.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.1k
views
Answer:
A: Tool for Human Gene Functional classes in R
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.7k
views
Answer:
A: Why does cuffdiff test differential isoform expression for genes with only one a
7.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
1.5k
views
Answer:
A: Protein Prediction from cancer
7.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
2.3k
views
Answer:
A: Error when uploading Wig file to USCS
7.7 years ago by
Satyajeet Khare
★ 1.6k
6
votes
2
replies
1.9k
views
Answer:
A: Differentiall analysis of chip-deq data
7.7 years ago by
Satyajeet Khare
★ 1.6k
2
votes
2
replies
2.2k
views
Answer:
A: error in tophat2
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.4k
views
Answer:
A: cummeRbund merge filtered data sets
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
14k
views
Answer:
A: download from SRA
7.7 years ago by
Satyajeet Khare
★ 1.6k
3
votes
0
replies
6.2k
views
Answer:
A: I am really pissed off by the bioinformatics software world. Do/can we have a be
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.2k
views
Answer:
A: Next Generation sequencing
7.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
1.7k
views
Answer:
A: How to analyze Cufflinks data
7.7 years ago by
Satyajeet Khare
★ 1.6k
2
votes
2
replies
2.3k
views
Answer:
A: lncRNA gene vs. lncRNA isoform
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
4.5k
views
Answer:
A: CummeRbund problem when creating gene sets: Error in sqliteSendQuery: rsqlite_qu
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.1k
views
Answer:
A: Does Cuffmerge discard single-exon transcripts?
7.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.0k
views
Answer:
A: Cufflinks input- reference information
7.7 years ago by
Satyajeet Khare
★ 1.6k
2
votes
0
replies
1.8k
views
Answer:
A: Control data for chip-seq analysis of SRX681547, SRX681548 data
7.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
1.9k
views
Answer:
A: running cufflinks with -G option result in novel transcripts
7.8 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.3k
views
Answer:
A: Correlation between expressions of two isoforms
7.8 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
5.0k
views
Answer:
A: Getgeo Error
7.8 years ago by
Satyajeet Khare
★ 1.6k
2
votes
0
replies
5.5k
views
Answer:
A: How to determine Up and Down regulated genes from log2(fold change)of the Cuffdi
7.8 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
5.3k
views
Answer:
A: Cuffdiff takes extremely long time at "Testing for differential expression and r
7.8 years ago by
Satyajeet Khare
★ 1.6k
2
votes
0
replies
3.5k
views
Answer:
A: why the same gene is located at different chromosomes ?
7.8 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
2.9k
views
Answer:
A: Replace XLOC id with gene symbol in FPKMmatrix function
7.8 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
2.9k
views
Answer:
A: Human Transcriptome In Colourspace?
8.0 years ago by
Satyajeet Khare
★ 1.6k
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