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7
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2
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6.2k
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Trinity : How To Co-Assemble Different Samples (Tumor And Healthy)
trinity assembly transcriptome
updated 2.9 years ago by ▴ 20 • written 12.2 years ago by 11k
0
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1
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955
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Answer: Answer: Exclude non shared SNPs from two datasets with PLINK
2.9 years ago by Nicolas Rosewick 11k
0
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0
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1.3k
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Comment: Comment: Genepop for LD testing SNPs dataset
3.0 years ago by Nicolas Rosewick 11k
0
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1
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1.3k
views
Comment: Comment: Genepop for LD testing SNPs dataset
3.0 years ago by Nicolas Rosewick 11k
3
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1
reply
1.3k
views
Answer: Answer: High confident germline SNP and INDELS for VQSR for reference genome GRCh37
3.0 years ago by Nicolas Rosewick 11k
0
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1
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1.9k
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Comment: Comment: Understanding GATK evaluation metrics
3.1 years ago by Nicolas Rosewick 11k
0
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1
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974
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Comment: C: How to generate dotplot using the lastz output file
3.2 years ago by Nicolas Rosewick 11k
0
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1
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2.2k
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Comment: C: plink : Batch effect issues after merge of two datasets
3.2 years ago by Nicolas Rosewick 11k
0
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1
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2.2k
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Comment: C: plink : Batch effect issues after merge of two datasets
3.2 years ago by Nicolas Rosewick 11k
1
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1
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1.1k
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Answer: A: Setting a threshold based on effective number of independent Snps in GWAS.
3.3 years ago by Nicolas Rosewick 11k
1
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0
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1.9k
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Comment: C: Help Compiling STAR
3.4 years ago by Nicolas Rosewick 11k
9
votes
5
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8.4k
views
R : How To Compute The Melting Temperature Tm
r
updated 2.0 years ago by ▴ 90 • written 11.5 years ago by 11k
0
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0
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685
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Where to find SNP genotype information for ENCODE samples
encode genotype
3.5 years ago by Nicolas Rosewick 11k
0
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1
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1.2k
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Comment: C: Should the number of significantly DE genes rise with the number of SVs estimate
3.5 years ago by Nicolas Rosewick 11k
0
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1
reply
6.5k
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Comment: C: increase spacing between groups in a bar plot
3.6 years ago by Nicolas Rosewick 11k
0
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1
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6.5k
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Comment: C: increase spacing between groups in a bar plot
3.6 years ago by Nicolas Rosewick 11k
2
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0
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952
views
Comment: C: Strange plots I got from R studio
3.6 years ago by Nicolas Rosewick 11k
13
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2
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8.7k
views
Answer: A: What is the VEP Impact column?
3.6 years ago by Nicolas Rosewick 11k
0
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0
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2.0k
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Comment: C: RNA seq data analysis and building co expression network
3.6 years ago by Nicolas Rosewick 11k
0
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1
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1.1k
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Comment: C: Weird results in TopHat2 paired-end alignment
3.6 years ago by Nicolas Rosewick 11k
0
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1
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1.6k
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Comment: C: GWAS results and linkage disequilibrium issue
3.6 years ago by Nicolas Rosewick 11k
0
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1
reply
773
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Comment: C: converting vcf into simpler version for downstream analysis
3.6 years ago by Nicolas Rosewick 11k
0
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0
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5.0k
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Comment: C: Subset VCF file by comparing CHROM,POS,REF and ALT
3.7 years ago by Nicolas Rosewick 11k
0
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0
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2.0k
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Comment: C: separate the figure
3.7 years ago by Nicolas Rosewick 11k
0
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1
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2.2k
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Comment: C: How I can describe ridgeplot?
3.7 years ago by Nicolas Rosewick 11k
0
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1
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2.2k
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Comment: C: How I can describe ridgeplot?
3.7 years ago by Nicolas Rosewick 11k
2
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1
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1.0k
views
Answer: A: BWA alignement for RNA Seq
3.8 years ago by Nicolas Rosewick 11k
1
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0
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939
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Comment: C: Problems removing a subset of individuals from ped files
3.8 years ago by Nicolas Rosewick 11k
0
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0
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616
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Answer: A: Gene expression variability
3.8 years ago by Nicolas Rosewick 11k
2
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1
reply
5.7k
views
Answer: A: change axis scale on ggplot2
3.8 years ago by Nicolas Rosewick 11k
1
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0
replies
1.1k
views
Answer: A: Permutation test (randomisation test) help - any advice appreciated
3.8 years ago by Nicolas Rosewick 11k
1
vote
1
reply
2.7k
views
Comment: C: Imputation results from TOPMED server
3.8 years ago by Nicolas Rosewick 11k
1
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1
reply
2.7k
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Comment: C: Imputation results from TOPMED server
3.8 years ago by Nicolas Rosewick 11k
2
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1
reply
2.8k
views
Answer: A: How to make box plot for different gene types
3.8 years ago by Nicolas Rosewick 11k
0
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0
replies
1.3k
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Comment: C: Reverse allele frequency
3.8 years ago by Nicolas Rosewick 11k
0
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1
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1.3k
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Comment: C: Reverse allele frequency
3.8 years ago by Nicolas Rosewick 11k
0
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1
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886
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Comment: C: Plots for gene expression data
3.8 years ago by Nicolas Rosewick 11k
2
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1
reply
2.6k
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Comment: C: Calculate p-value from Weibull distribution?
3.8 years ago by Nicolas Rosewick 11k
0
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0
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1.1k
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Comment: C: population stratification using PLINK
3.8 years ago by Nicolas Rosewick 11k
0
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1
reply
837
views
Comment: C: Chromosome position sample files merging in R
3.8 years ago by Nicolas Rosewick 11k
0
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0
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741
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Comment: C: Population stratification with PLINK
3.8 years ago by Nicolas Rosewick 11k
1
vote
2
replies
1.2k
views
Answer: A: p value for permutation test for gene-interaction data
3.8 years ago by Nicolas Rosewick 11k
1
vote
0
replies
651
views
Spatial Transcriptomics : Compute expression correlation between two adjacent slides (technical replicates)
spatial transcriptomics
3.8 years ago by Nicolas Rosewick 11k
1
vote
0
replies
1.4k
views
Answer: A: tabix on 1000genome files
3.9 years ago by Nicolas Rosewick 11k
1
vote
1
reply
697
views
Comment: C: How to create MAplot in R for only one sample?
3.9 years ago by Nicolas Rosewick 11k
0
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0
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750
views
Comment: C: Multiple hypothesis testing
3.9 years ago by Nicolas Rosewick 11k
0
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1
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2.0k
views
Answer: A: RNA seq data analysis and building co expression network
3.9 years ago by Nicolas Rosewick 11k
0
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1
reply
3.2k
views
Comment: C: PCA: log transform and scale=T/F?
3.9 years ago by Nicolas Rosewick 11k
0
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1
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2.3k
views
Answer: A: Getting the db SNP VCF file for GRCh38.p13
4.0 years ago by Nicolas Rosewick 11k
1
vote
1
reply
923
views
Comment: C: gnoMAD mutation and essential gene
4.0 years ago by Nicolas Rosewick 11k
1,078 results • Page 2 of 22
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