Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
0
replies
1.3k
views
Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
7 months ago by Nicolas Rosewick 11k
0
votes
1
reply
792
views
Answer: Answer: FindAllMarkers in Seurat and statistical problem
9 months ago by Nicolas Rosewick 11k
6
votes
0
replies
560
views
Answer: Answer: How to plot combined bar graph in R
11 months ago by Nicolas Rosewick 11k
1
vote
0
replies
1.1k
views
Answer: Answer: TCGAbiolinks
12 months ago by Nicolas Rosewick 11k
0
votes
1
reply
667
views
Answer: Answer: How to do differential expression without having replicates
14 months ago by Nicolas Rosewick 11k
0
votes
1
reply
683
views
Answer: Answer: GIAB and GRCh38
14 months ago by Nicolas Rosewick 11k
1
vote
1
reply
648
views
Answer: Answer: Visualization of Enrichment score for spatial 10x visium samples
15 months ago by Nicolas Rosewick 11k
2
votes
1
reply
685
views
Answer: Answer: Is it possible to do bedtools multicov across the entire genome?
15 months ago by Nicolas Rosewick 11k
2
votes
1
reply
1.3k
views
Answer: Answer: IGV coverage bar has color, but no mutation?
15 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.3k
views
Answer: Answer: Discrepancy between genotype and reference genome build - issue with strand flip
18 months ago by Nicolas Rosewick 11k
4
votes
0
replies
510
views
Answer: Answer: pvalue vs adjust p-value
18 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.5k
views
Answer: Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
19 months ago by Nicolas Rosewick 11k
0
votes
1
reply
941
views
Answer: Answer: Exclude non shared SNPs from two datasets with PLINK
2.9 years ago by Nicolas Rosewick 11k
3
votes
1
reply
1.2k
views
Answer: Answer: High confident germline SNP and INDELS for VQSR for reference genome GRCh37
3.0 years ago by Nicolas Rosewick 11k
1
vote
1
reply
1.1k
views
Answer: A: Setting a threshold based on effective number of independent Snps in GWAS.
3.3 years ago by Nicolas Rosewick 11k
13
votes
2
replies
8.6k
views
Answer: A: What is the VEP Impact column?
3.5 years ago by Nicolas Rosewick 11k
2
votes
1
reply
1.0k
views
Answer: A: BWA alignement for RNA Seq
3.7 years ago by Nicolas Rosewick 11k
0
votes
0
replies
611
views
Answer: A: Gene expression variability
3.7 years ago by Nicolas Rosewick 11k
2
votes
1
reply
5.7k
views
Answer: A: change axis scale on ggplot2
3.7 years ago by Nicolas Rosewick 11k
1
vote
0
replies
1.1k
views
Answer: A: Permutation test (randomisation test) help - any advice appreciated
3.7 years ago by Nicolas Rosewick 11k
2
votes
1
reply
2.8k
views
Answer: A: How to make box plot for different gene types
3.8 years ago by Nicolas Rosewick 11k
1
vote
2
replies
1.2k
views
Answer: A: p value for permutation test for gene-interaction data
3.8 years ago by Nicolas Rosewick 11k
1
vote
0
replies
1.4k
views
Answer: A: tabix on 1000genome files
3.9 years ago by Nicolas Rosewick 11k
0
votes
1
reply
2.0k
views
Answer: A: RNA seq data analysis and building co expression network
3.9 years ago by Nicolas Rosewick 11k
0
votes
1
reply
2.3k
views
Answer: A: Getting the db SNP VCF file for GRCh38.p13
3.9 years ago by Nicolas Rosewick 11k
1
vote
0
replies
2.3k
views
Answer: A: [SOLVED] vcfanno: issues to annotate VCF with gnomAD r3.0
4.1 years ago by Nicolas Rosewick 11k
2
votes
0
replies
5.7k
views
Answer: A: Trying To Pull Regions From An Online Bam File Without Downloading
4.1 years ago by Nicolas Rosewick 11k
0
votes
0
replies
567
views
Answer: A: How to determine the list of all genes (at least expressed once in RNA Seq Exper
4.2 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.6k
views
Answer: A: Should I merge the Paired-end RNA-seq reads for BLAT
4.3 years ago by Nicolas Rosewick 11k
1
vote
1
reply
2.3k
views
Answer: A: Student's t-test (For Paired samples) calculation
updated 4.3 years ago by 43k • written 8.2 years ago by 11k
1
vote
0
replies
3.3k
views
Answer: A: How will i map exons (FASTA Format) onto human genome to get the genomic coordin
updated 4.4 years ago by 43k • written 10.0 years ago by 11k
1
vote
1
reply
4.8k
views
Answer: A: Find closest gene to chromosome location
updated 4.4 years ago by 43k • written 8.4 years ago by 11k
1
vote
0
replies
982
views
Answer: A: Creating a set of rare variants shared by a child and a parents with VCF and Tab
4.4 years ago by Nicolas Rosewick 11k
2
votes
0
replies
1.4k
views
Answer: C: How could I get population or individual specific genotypes from multi sample VC
4.4 years ago by Nicolas Rosewick 11k
1
vote
0
replies
923
views
Answer: A: Technical challenges inherent to WES processing - any recommended review sources
4.4 years ago by Nicolas Rosewick 11k
1
vote
1
reply
7.9k
views
Answer: A: Plotting a line graph using the ggplot2 for multiple columns (genes)
4.4 years ago by Nicolas Rosewick 11k
1
vote
1
reply
1.4k
views
Answer: C: Run R script on 100 files using for loop
4.5 years ago by Nicolas Rosewick 11k
2
votes
1
reply
5.0k
views
Answer: A: Getting all Ensembl protein lengths
updated 4.5 years ago by 43k • written 8.8 years ago by 11k
5
votes
1
reply
7.8k
views
Answer: A: RNA-Seq minimum read length recommendations
4.6 years ago by Nicolas Rosewick 11k
1
vote
0
replies
973
views
Answer: A: How to Annotate Long non coding RNA?
4.6 years ago by Nicolas Rosewick 11k
1
vote
0
replies
2.0k
views
Answer: A: ggplot density plot across bed file
4.6 years ago by Nicolas Rosewick 11k
4
votes
0
replies
767
views
Answer: A: Classify extracted variants
4.6 years ago by Nicolas Rosewick 11k
0
votes
0
replies
3.2k
views
Answer: A: A question on GenomicsDBImport (GATK)
4.6 years ago by Nicolas Rosewick 11k
2
votes
0
replies
1.5k
views
Answer: A: Calculate p-value for experiment group with replicates, while control group with
4.6 years ago by Nicolas Rosewick 11k
2
votes
0
replies
3.1k
views
Answer: A: Finding Novel Transcripts From A De Novo Transcriptome Assembly
updated 4.6 years ago by 11k • written 12.1 years ago by 11k
6
votes
1
reply
17k
views
Answer: A: how to run the Deseq2 tool wothout replicates.
4.7 years ago by Nicolas Rosewick 11k
4
votes
1
reply
2.6k
views
Answer: A: Tranche Plot after VSQR
4.7 years ago by Nicolas Rosewick 11k
0
votes
0
replies
954
views
Answer: A: Translate long names of proteins to short names
4.7 years ago by Nicolas Rosewick 11k
3
votes
1
reply
2.8k
views
Answer: A: STAR genome generate taking long time and less thread.
4.8 years ago by Nicolas Rosewick 11k
1
vote
0
replies
1.9k
views
Answer: A: Can Mutect2 be used for paper?
4.8 years ago by Nicolas Rosewick 11k
227 results • Page 1 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6