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3
votes
8
replies
6.7k
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7 follow
GATK genomicsDBimport intervals for WGS
gatk genomicsdbimport
updated 4 weeks ago by • 0 • written 5.2 years ago by 11k
0
votes
0
replies
148
views
Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
12 weeks ago by Nicolas Rosewick 11k
2
votes
1
reply
513
views
Comment: Comment: How do I add sample annotations to this data?
7 months ago by Nicolas Rosewick 11k
0
votes
0
replies
486
views
Comment: Comment: DESEQ2 analysis result
7 months ago by Nicolas Rosewick 11k
0
votes
0
replies
458
views
Comment: Comment: how to create a loop in R
8 months ago by Nicolas Rosewick 11k
1
vote
0
replies
1.4k
views
Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
8 months ago by Nicolas Rosewick 11k
0
votes
1
reply
709
views
Comment: Comment: How to understand if a GWAS sample comes from Chromosome X or Y
9 months ago by Nicolas Rosewick 11k
0
votes
2
replies
1.3k
views
Comment: Comment: How to allocate memory and CPU without SLURM in a linux cluster?
10 months ago by Nicolas Rosewick 11k
0
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1
reply
844
views
Answer: Answer: FindAllMarkers in Seurat and statistical problem
10 months ago by Nicolas Rosewick 11k
0
votes
0
replies
1.9k
views
Comment: Comment: Advantages of install.packages() versus BiocManager::install()
11 months ago by Nicolas Rosewick 11k
6
votes
0
replies
584
views
Answer: Answer: How to plot combined bar graph in R
12 months ago by Nicolas Rosewick 11k
0
votes
1
reply
827
views
Comment: Comment: How can we separate downregulated genes and upregulated genes from list of dataf
13 months ago by Nicolas Rosewick 11k
2
votes
0
replies
697
views
Comment: Comment: Tophat: Genome indexing error
13 months ago by Nicolas Rosewick 11k
1
vote
0
replies
1.2k
views
Answer: Answer: TCGAbiolinks
13 months ago by Nicolas Rosewick 11k
0
votes
0
replies
4.0k
views
Comment: Comment: Identifying long stretches of Ns
13 months ago by Nicolas Rosewick 11k
17
votes
14
replies
30k
views
13 follow
Merge Paired-End Reads
fastq
updated 14 months ago by 44k • written 12.6 years ago by 11k
0
votes
1
reply
683
views
Comment: Comment: Plink-association test
14 months ago by Nicolas Rosewick 11k
2
votes
1
reply
848
views
Comment: Comment: differential gene analysis
14 months ago by Nicolas Rosewick 11k
1
vote
1
reply
558
views
Comment: Comment: Find genes which are related to SNPs
14 months ago by Nicolas Rosewick 11k
0
votes
1
reply
870
views
Comment: Comment: Bedtools multicov outfile file error
15 months ago by Nicolas Rosewick 11k
0
votes
0
replies
711
views
Comment: Comment: RNAseq matrix containing zero values
15 months ago by Nicolas Rosewick 11k
0
votes
1
reply
690
views
Answer: Answer: How to do differential expression without having replicates
15 months ago by Nicolas Rosewick 11k
0
votes
1
reply
709
views
Answer: Answer: GIAB and GRCh38
15 months ago by Nicolas Rosewick 11k
1
vote
2
replies
1.9k
views
Comment: Comment: Error in VQSR first step
15 months ago by Nicolas Rosewick 11k
1
vote
0
replies
1.1k
views
Comment: Comment: make BED file from existing BIM and FAM files
16 months ago by Nicolas Rosewick 11k
1
vote
1
reply
677
views
Answer: Answer: Visualization of Enrichment score for spatial 10x visium samples
16 months ago by Nicolas Rosewick 11k
2
votes
1
reply
708
views
Answer: Answer: Is it possible to do bedtools multicov across the entire genome?
16 months ago by Nicolas Rosewick 11k
2
votes
1
reply
1.4k
views
Answer: Answer: IGV coverage bar has color, but no mutation?
16 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.4k
views
Comment: Comment: IGV coverage bar has color, but no mutation?
16 months ago by Nicolas Rosewick 11k
1
vote
1
reply
2.7k
views
Comment: Comment: How to increase the speed of miRanda target prediction program?
16 months ago by Nicolas Rosewick 11k
0
votes
0
replies
837
views
Job: Postdoctoral fellow in bioinformatics - ULB (Belgium)
Belgium
updated 17 months ago by 44k • written 17 months ago by 11k
2
votes
0
replies
1.2k
views
Comment: Comment: parallel for 10000 whole exome data
17 months ago by Nicolas Rosewick 11k
0
votes
0
replies
1.3k
views
Comment: Comment: Discrepancy between genotype and reference genome build - issue with strand flip
19 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.3k
views
Answer: Answer: Discrepancy between genotype and reference genome build - issue with strand flip
19 months ago by Nicolas Rosewick 11k
4
votes
0
replies
523
views
Answer: Answer: pvalue vs adjust p-value
19 months ago by Nicolas Rosewick 11k
0
votes
1
reply
747
views
Comment: Comment: What is the best way to pre-process RNA-Seq data?
20 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.6k
views
Answer: Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
20 months ago by Nicolas Rosewick 11k
5
votes
4
replies
3.7k
views
hg19 interval list
gatk genome interval hg19
updated 24 months ago by 4.2k • written 5.1 years ago by 11k
0
votes
1
reply
559
views
Comment: Comment: Mutations in contiguous sites within a sample
2.1 years ago by Nicolas Rosewick 11k
1
vote
1
reply
1.1k
views
Comment: Comment: Query hg37 rsid information
2.1 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.2k
views
Comment: Comment: sc/sn RNASeq
2.2 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.2k
views
Comment: Comment: sc/sn RNASeq
2.2 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.0k
views
Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
2.3 years ago by Nicolas Rosewick 11k
0
votes
0
replies
699
views
Comment: Comment: Reads mapping
2.3 years ago by Nicolas Rosewick 11k
1
vote
0
replies
480
views
GWAS : normalization of continuous phenotype across different cohorts
gwas normalization
2.3 years ago by Nicolas Rosewick 11k
2
votes
1
reply
1.7k
views
Comment: Comment: Inflated p-values in QQ-plot
2.3 years ago by Nicolas Rosewick 11k
0
votes
6
replies
2.2k
views
plink : Batch effect issues after merge of two datasets
plink merge
updated 2.4 years ago by • 0 • written 3.2 years ago by 11k
1
vote
0
replies
63k
views
Comment: Comment: Insert Size And Fragment Size ?
2.6 years ago by Nicolas Rosewick 11k
1
vote
0
replies
3.0k
views
Comment: Comment: DESeq2 normalization - Found Difference in values when calculated manually
2.7 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.5k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.8 years ago by Nicolas Rosewick 11k
1,078 results • Page 1 of 22
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