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Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment
seurat
spaceranger
visium
7 weeks ago by
Nicolas Rosewick
11k
2
votes
1
reply
453
views
Comment:
Comment: How do I add sample annotations to this data?
6 months ago by
Nicolas Rosewick
11k
0
votes
0
replies
466
views
Comment:
Comment: DESEQ2 analysis result
6 months ago by
Nicolas Rosewick
11k
0
votes
0
replies
426
views
Comment:
Comment: how to create a loop in R
7 months ago by
Nicolas Rosewick
11k
1
vote
0
replies
1.3k
views
Answer:
Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
7 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
659
views
Comment:
Comment: How to understand if a GWAS sample comes from Chromosome X or Y
7 months ago by
Nicolas Rosewick
11k
0
votes
2
replies
1.3k
views
Comment:
Comment: How to allocate memory and CPU without SLURM in a linux cluster?
9 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
770
views
Answer:
Answer: FindAllMarkers in Seurat and statistical problem
9 months ago by
Nicolas Rosewick
11k
0
votes
0
replies
1.8k
views
Comment:
Comment: Advantages of install.packages() versus BiocManager::install()
10 months ago by
Nicolas Rosewick
11k
6
votes
0
replies
551
views
Answer:
Answer: How to plot combined bar graph in R
11 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
780
views
Comment:
Comment: How can we separate downregulated genes and upregulated genes from list of dataf
11 months ago by
Nicolas Rosewick
11k
2
votes
0
replies
658
views
Comment:
Comment: Tophat: Genome indexing error
11 months ago by
Nicolas Rosewick
11k
1
vote
0
replies
1.1k
views
Answer:
Answer: TCGAbiolinks
11 months ago by
Nicolas Rosewick
11k
0
votes
0
replies
3.9k
views
Comment:
Comment: Identifying long stretches of Ns
12 months ago by
Nicolas Rosewick
11k
17
votes
14
replies
30k
views
13 follow
Merge Paired-End Reads
fastq
updated 12 months ago by
Ram
43k • written 12.5 years ago by
Nicolas Rosewick
11k
0
votes
1
reply
622
views
Comment:
Comment: Plink-association test
13 months ago by
Nicolas Rosewick
11k
2
votes
1
reply
815
views
Comment:
Comment: differential gene analysis
13 months ago by
Nicolas Rosewick
11k
1
vote
1
reply
528
views
Comment:
Comment: Find genes which are related to SNPs
13 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
823
views
Comment:
Comment: Bedtools multicov outfile file error
14 months ago by
Nicolas Rosewick
11k
0
votes
0
replies
685
views
Comment:
Comment: RNAseq matrix containing zero values
14 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
659
views
Answer:
Answer: How to do differential expression without having replicates
14 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
663
views
Answer:
Answer: GIAB and GRCh38
14 months ago by
Nicolas Rosewick
11k
1
vote
2
replies
1.8k
views
Comment:
Comment: Error in VQSR first step
14 months ago by
Nicolas Rosewick
11k
1
vote
0
replies
1.1k
views
Comment:
Comment: make BED file from existing BIM and FAM files
14 months ago by
Nicolas Rosewick
11k
1
vote
1
reply
638
views
Answer:
Answer: Visualization of Enrichment score for spatial 10x visium samples
14 months ago by
Nicolas Rosewick
11k
2
votes
1
reply
674
views
Answer:
Answer: Is it possible to do bedtools multicov across the entire genome?
14 months ago by
Nicolas Rosewick
11k
2
votes
1
reply
1.3k
views
Answer:
Answer: IGV coverage bar has color, but no mutation?
15 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
1.3k
views
Comment:
Comment: IGV coverage bar has color, but no mutation?
15 months ago by
Nicolas Rosewick
11k
1
vote
1
reply
2.6k
views
Comment:
Comment: How to increase the speed of miRanda target prediction program?
15 months ago by
Nicolas Rosewick
11k
0
votes
0
replies
794
views
Job:
Postdoctoral fellow in bioinformatics - ULB (Belgium)
Belgium
updated 16 months ago by
Ram
43k • written 16 months ago by
Nicolas Rosewick
11k
2
votes
0
replies
1.1k
views
Comment:
Comment: parallel for 10000 whole exome data
16 months ago by
Nicolas Rosewick
11k
0
votes
0
replies
1.3k
views
Comment:
Comment: Discrepancy between genotype and reference genome build - issue with strand flip
18 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
1.3k
views
Answer:
Answer: Discrepancy between genotype and reference genome build - issue with strand flip
18 months ago by
Nicolas Rosewick
11k
4
votes
0
replies
504
views
Answer:
Answer: pvalue vs adjust p-value
18 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
725
views
Comment:
Comment: What is the best way to pre-process RNA-Seq data?
19 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
1.5k
views
Answer:
Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
19 months ago by
Nicolas Rosewick
11k
5
votes
4
replies
3.6k
views
hg19 interval list
gatk
genome
interval
hg19
updated 22 months ago by
LauferVA
4.2k • written 5.0 years ago by
Nicolas Rosewick
11k
0
votes
1
reply
529
views
Comment:
Comment: Mutations in contiguous sites within a sample
23 months ago by
Nicolas Rosewick
11k
1
vote
1
reply
1.0k
views
Comment:
Comment: Query hg37 rsid information
24 months ago by
Nicolas Rosewick
11k
0
votes
1
reply
1.1k
views
Comment:
Comment: sc/sn RNASeq
2.1 years ago by
Nicolas Rosewick
11k
0
votes
1
reply
1.1k
views
Comment:
Comment: sc/sn RNASeq
2.1 years ago by
Nicolas Rosewick
11k
0
votes
1
reply
961
views
Comment:
Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
2.2 years ago by
Nicolas Rosewick
11k
0
votes
0
replies
676
views
Comment:
Comment: Reads mapping
2.2 years ago by
Nicolas Rosewick
11k
1
vote
0
replies
462
views
GWAS : normalization of continuous phenotype across different cohorts
gwas
normalization
2.2 years ago by
Nicolas Rosewick
11k
2
votes
1
reply
1.6k
views
Comment:
Comment: Inflated p-values in QQ-plot
2.2 years ago by
Nicolas Rosewick
11k
0
votes
6
replies
2.1k
views
plink : Batch effect issues after merge of two datasets
plink
merge
updated 2.3 years ago by
mkasan
• 0 • written 3.1 years ago by
Nicolas Rosewick
11k
1
vote
0
replies
63k
views
Comment:
Comment: Insert Size And Fragment Size ?
2.5 years ago by
Nicolas Rosewick
11k
1
vote
0
replies
2.9k
views
Comment:
Comment: DESeq2 normalization - Found Difference in values when calculated manually
2.6 years ago by
Nicolas Rosewick
11k
0
votes
1
reply
1.5k
views
Comment:
Comment: Best practice for running GATK VQSR on X chromosome
2.7 years ago by
Nicolas Rosewick
11k
2
votes
7
replies
6.4k
views
6 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 2.8 years ago by
cocchi.e89
▴ 270 • written 5.1 years ago by
Nicolas Rosewick
11k
1,078 results • Page
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