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Comment: C: Automatically feeding a good mate inner distance to TopHat2
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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Comment: C: Cutadapt paired end reads with 1 adapter list fasta
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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Comment: C: CGHub/TCGA RNA-Seq data trimming adapters
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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Comment: C: Where to get list of all Illumina adapters
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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Comment: C: Using ref.fa (with random contig) on bam file aligned without random contigs
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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2.9k
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Comment: C: Request for karyotypically sorted Ensembl reference fasta and its dbSNP vcf for
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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3.7k
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Comment: C: Automating pre-alignment (and post-alignment) quality control
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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7.4k
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Comment: C: Change chromosome notation to match a new reference
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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1
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3.7k
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Comment: C: Automating pre-alignment (and post-alignment) quality control
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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1
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2.8k
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Comment: C: Mixed opinions on somatic variant calling method
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 390
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3.5k
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Comment: C: NCBI dbSNP compatibility w/ Ensembl whole genome
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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3.5k
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Comment: C: NCBI dbSNP compatibility w/ Ensembl whole genome
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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0
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3.0k
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Comment: C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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1
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3.0k
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Comment: C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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0
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3.0k
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Comment: C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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1
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3.0k
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Comment: C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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1
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3.0k
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Comment: C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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1
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3.0k
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Comment: C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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2.1k
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Comment: C: [GATK] Weird error using Picard SortVcf on COSMIC file
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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1
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1.9k
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Comment: C: No somatic mutation in tumor sample
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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1.9k
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Comment: C: No somatic mutation in tumor sample
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 390
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5.8k
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Comment: C: Bowtie memory warning
8.0 years ago by umn_bist ▴ 390
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1
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3.8k
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Comment: C: Salmon/Sailfish for repeat element quantification?
8.1 years ago by umn_bist ▴ 390
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1
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5.0k
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Comment: C: GATK MuTect2 duplication filter
8.1 years ago by umn_bist ▴ 390
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1.9k
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Comment: C: cBioPortal 'Mutations' tab
8.1 years ago by umn_bist ▴ 390
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1
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4.3k
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Comment: C: BBDuk trimming concern: large discarded, too aggressive (?)
8.1 years ago by umn_bist ▴ 390
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1
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4.3k
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Comment: C: BBDuk trimming concern: large discarded, too aggressive (?)
8.1 years ago by umn_bist ▴ 390
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4.3k
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Comment: C: BBDuk trimming concern: large discarded, too aggressive (?)
8.1 years ago by umn_bist ▴ 390
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2
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4.4k
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Comment: C: How to build a custom reference genome (from a BED file)
8.2 years ago by umn_bist ▴ 390
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0
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1.9k
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Comment: C: Faster alternative to Prinseq PE trimming polyN
8.2 years ago by umn_bist ▴ 390
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1.9k
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Comment: C: Faster alternative to Prinseq PE trimming polyN
8.2 years ago by umn_bist ▴ 390
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1
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1.9k
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Comment: C: Faster alternative to Prinseq PE trimming polyN
8.2 years ago by umn_bist ▴ 390
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1
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5.6k
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Comment: C: Why is normal blood used for matched tumor (instead of adjacent norm tissue)?
8.2 years ago by umn_bist ▴ 390
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10.0k
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Comment: C: FastQC: 'Per base sequence content' for RNA-Seq
8.2 years ago by umn_bist ▴ 390
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1
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3.6k
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Comment: C: [ERROR] Malformed VCF: empty alleles are not permitted in VCF records
8.2 years ago by umn_bist ▴ 390
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1
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3.5k
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Comment: C: NCBI dbSNP compatibility w/ Ensembl whole genome
8.2 years ago by umn_bist ▴ 390
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0
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2.1k
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Comment: C: RNA-seq expression profiling
8.2 years ago by umn_bist ▴ 390
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1
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2.8k
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Comment: C: How to generate a mask gtf for use with cufflinks
8.2 years ago by umn_bist ▴ 390
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1
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1.9k
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Comment: C: Conceptual question regarding retrotransposon (RNA-seq) analysis
8.2 years ago by umn_bist ▴ 390
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1
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8.4k
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Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.2 years ago by umn_bist ▴ 390
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0
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8.4k
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Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.2 years ago by umn_bist ▴ 390
0
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1
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8.4k
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Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.2 years ago by umn_bist ▴ 390
0
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1
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1.6k
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Comment: Comment: Trouble using if string in column 3 of .csv exist, then statement
updated 21 months ago by 43k • written 8.2 years ago by ▴ 390
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0
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5.6k
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Comment: C: STAR add RG
8.2 years ago by umn_bist ▴ 390
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1
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5.6k
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Comment: C: STAR add RG
8.2 years ago by umn_bist ▴ 390
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2
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5.6k
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Comment: C: STAR add RG
8.2 years ago by umn_bist ▴ 390
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1
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3.4k
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Comment: C: RNA-seq dedupe PCR contamination before or after mapping
8.2 years ago by umn_bist ▴ 390
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0
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1.9k
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Comment: C: Pipeline for >100 RNA-Seq PE samples
8.2 years ago by umn_bist ▴ 390
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1
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4.2k
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Comment: C: cutadapt: forward and reverse adapter sequence options
8.2 years ago by umn_bist ▴ 390
0
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0
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3.1k
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Comment: C: Automatically feeding a good mate inner distance to TopHat2
8.3 years ago by umn_bist ▴ 390
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