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328
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Comment: Comment: Snakemake paralellize
3 months ago by Eric Lim ★ 2.1k
1
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1
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556
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Comment: Comment: Suggestions for a simpler solution for collecting snakemake rule output in a tex
3 months ago by Eric Lim ★ 2.1k
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1
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1.2k
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Comment: Comment: Snakemake issue with wrappers
6 months ago by Eric Lim ★ 2.1k
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0
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949
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Comment: Comment: Wildcards in Snakemake
6 months ago by Eric Lim ★ 2.1k
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1
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949
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Comment: Comment: Wildcards in Snakemake
6 months ago by Eric Lim ★ 2.1k
1
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0
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1.9k
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Answer: Answer: Don't choose Novogene for your sequencing projects
9 months ago by Eric Lim ★ 2.1k
1
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0
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731
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
10 months ago by Eric Lim ★ 2.1k
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1
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734
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Comment: Comment: take user options before calling snakemake
13 months ago by Eric Lim ★ 2.1k
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1
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880
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Comment: Comment: Do we need replicates for PSI calculation in SUPPA2?
13 months ago by Eric Lim ★ 2.1k
2
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1
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1.7k
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Comment: Comment: how to speed up snakemake workflow
16 months ago by Eric Lim ★ 2.1k
1
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1
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1.4k
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Answer: Answer: how to specify a specific conda environment in a specific rule with snakemake?
18 months ago by Eric Lim ★ 2.1k
1
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0
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749
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Comment: Comment: Rule all has wrong order
19 months ago by Eric Lim ★ 2.1k
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0
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2.2k
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Comment: Comment: Prepare for a job interview in bioinformatics
20 months ago by Eric Lim ★ 2.1k
1
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1
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3.0k
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Comment: Comment: Big difference in estimated duplicate reads between forward and reverse of paire
23 months ago by Eric Lim ★ 2.1k
0
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0
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916
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Job: Bioinformatics Lead at Stoke Therapeutics, Inc (MA)
rna-splicing
updated 22 months ago by 43k • written 2.1 years ago by ★ 2.1k
0
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1
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1.6k
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Comment: Comment: Understanding percent spliced in
2.2 years ago by Eric Lim ★ 2.1k
0
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1
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1.3k
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Comment: Comment: Snakemake error in gatk pipeline
2.3 years ago by Eric Lim ★ 2.1k
1
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0
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3.9k
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Comment: Comment: Read bam/cram file with IGV from aws s3
2.3 years ago by Eric Lim ★ 2.1k
3
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1
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4.5k
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Answer: Answer: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by Eric Lim ★ 2.1k
1
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0
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608
views
Comment: Comment: What happens to the outputs when you update the rule's conda environment
2.3 years ago by Eric Lim ★ 2.1k
3
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1
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1.4k
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Comment: Comment: Snakemake issue
2.3 years ago by Eric Lim ★ 2.1k
0
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0
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2.1k
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Answer: Answer: Snakemake command line arguments
2.3 years ago by Eric Lim ★ 2.1k
1
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1
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2.3k
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Comment: Comment: snakemake how to get or create wildcards from newly generated files
2.3 years ago by Eric Lim ★ 2.1k
1
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0
replies
2.1k
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Comment: Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.4 years ago by Eric Lim ★ 2.1k
1
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1
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2.1k
views
Comment: Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.4 years ago by Eric Lim ★ 2.1k
2
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1
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2.1k
views
Answer: Answer: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.4 years ago by Eric Lim ★ 2.1k
0
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2
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2.9k
views
Comment: Comment: Snakemake Megahit error
2.5 years ago by Eric Lim ★ 2.1k
0
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1
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2.9k
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Comment: Comment: Snakemake Megahit error
2.5 years ago by Eric Lim ★ 2.1k
1
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0
replies
2.0k
views
Comment: Comment: Missing Input files Error with snakemake pipeline
2.5 years ago by Eric Lim ★ 2.1k
1
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1
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2.0k
views
Comment: Comment: Missing Input files Error with snakemake pipeline
2.5 years ago by Eric Lim ★ 2.1k
2
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1
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2.0k
views
Answer: Answer: Missing Input files Error with snakemake pipeline
2.5 years ago by Eric Lim ★ 2.1k
1
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0
replies
2.9k
views
Comment: Comment: Snakemake Megahit error
2.5 years ago by Eric Lim ★ 2.1k
0
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0
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658
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Comment: Comment: snakemake input wildcards
2.5 years ago by Eric Lim ★ 2.1k
2
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1
reply
3.9k
views
Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
2.8 years ago by Eric Lim ★ 2.1k
1
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0
replies
949
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Job: Bioinformatics internships and co-ops (2021) at Stoke Therapeutics. Remote locations in the US.
internship co-op
updated 13 months ago by 43k • written 3.2 years ago by ★ 2.1k
0
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0
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2.3k
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Comment: C: Bioinformatics Server on AWS
4.2 years ago by Eric Lim ★ 2.1k
4
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1
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4.1k
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Answer: A: Snakemake: Force execution of rules in a specific order - ignoring wildcards
4.2 years ago by Eric Lim ★ 2.1k
1
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1
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1.8k
views
Comment: C: GSK Data Strategy & Design Expert
4.3 years ago by Eric Lim ★ 2.1k
8
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9
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3.0k
views
6 follow
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
RNA-Seq duplication fastqc
updated 23 months ago by ▴ 850 • written 4.5 years ago by ★ 2.1k
0
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0
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1.1k
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Comment: C: Generate list of numbers corresponding to fq reads based on 6-character barcode
4.5 years ago by Eric Lim ★ 2.1k
1
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0
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2.5k
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Comment: C: how to index different genomes with snakemake with different parameters?
4.5 years ago by Eric Lim ★ 2.1k
0
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0
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1.7k
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Comment: C: LiftOver from b37
4.5 years ago by Eric Lim ★ 2.1k
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0
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1.1k
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Comment: C: Understanding the annotation tag
4.5 years ago by Eric Lim ★ 2.1k
2
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0
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991
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Answer: C: Identifying codons from rna-seq data (bed/bam file)
4.5 years ago by Eric Lim ★ 2.1k
1
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1
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3.0k
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Comment: C: Big difference in estimated duplicate reads between forward and reverse of paire
4.5 years ago by Eric Lim ★ 2.1k
0
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1
reply
3.0k
views
Comment: C: Big difference in estimated duplicate reads between forward and reverse of paire
4.5 years ago by Eric Lim ★ 2.1k
0
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0
replies
1.8k
views
Job: Bioinformatics Analyst - Stoke Therapeutics, Inc, Bedford MA, USA
aws web-application ngs
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.1k
0
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0
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8.4k
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Comment: C: snakemake: pipeline failed with MissingOutputException
4.5 years ago by Eric Lim ★ 2.1k
0
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1
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8.4k
views
Comment: C: snakemake: pipeline failed with MissingOutputException
4.5 years ago by Eric Lim ★ 2.1k
1
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1
reply
1.9k
views
Answer: A: Remove character from Fasta IDs -- python
4.5 years ago by Eric Lim ★ 2.1k
231 results • Page 1 of 5
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