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Answer: Answer: The judgement of TP between the vcf files using vcfeval. Are 0/1 and 1/0 the sam
2.3 years ago by 4galaxy77 2.8k
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Answer: Answer: BAM dataset to Genotype data conversion using PLINK
2.4 years ago by 4galaxy77 2.8k
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1.2k
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Answer: Answer: Bash loop, count for Chromopainter script
2.5 years ago by 4galaxy77 2.8k
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1.0k
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Answer: Answer: Phasing with Beagle 5.2 and no reference panel
2.5 years ago by 4galaxy77 2.8k
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1.0k
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Answer: Answer: Subsetting/filtering a tibble by a combination of data stored in a second tibble
2.5 years ago by 4galaxy77 2.8k
3
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6.0k
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Answer: Answer: Should I buy a new apple M1-max with 64Gb Ram for single cell RNA seq analysis?
2.5 years ago by 4galaxy77 2.8k
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Answer: Answer: How to convert a bcf file to vcf with bcftools?
2.5 years ago by 4galaxy77 2.8k
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1.1k
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Answer: Answer: Speeding up Eagle phasing and imputation
2.5 years ago by 4galaxy77 2.8k
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2.2k
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Answer: Answer: Sliding window plot using Python
2.5 years ago by 4galaxy77 2.8k
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Answer: Answer: Filtering with vcftools by QUAL, Does not produce an output file
2.5 years ago by 4galaxy77 2.8k
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674
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Answer: Answer: vcf file indiviual column interpretation
2.5 years ago by 4galaxy77 2.8k
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2.0k
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Answer: Answer: Open source python tool for convert VCF files to JSON?
2.6 years ago by 4galaxy77 2.8k
4
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1.1k
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Answer: Answer: adding allele frequencies to a vcf
2.6 years ago by 4galaxy77 2.8k
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841
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Answer: Answer: Where to find public human WGS fastq not from 1KGP?
2.7 years ago by 4galaxy77 2.8k
6
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1.9k
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Answer: Answer: linux for genomics
2.7 years ago by 4galaxy77 2.8k
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4.4k
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Answer: Answer: What is the difference between SNP and a mutation ?
2.9 years ago by 4galaxy77 2.8k
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2.5k
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Answer: Answer: problem for installing packages
2.9 years ago by 4galaxy77 2.8k
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791
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Answer: Answer: Find sequence/variants from ancient-DNA genomes
2.9 years ago by 4galaxy77 2.8k
2
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1.1k
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Answer: Answer: Is 30X coverage good enough ?
2.9 years ago by 4galaxy77 2.8k
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4.4k
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Answer: Answer: How to remove samples with no genotypes from vcf
2.9 years ago by 4galaxy77 2.8k
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718
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Answer: Answer: Finding length of multiple fastq.gz files
2.9 years ago by 4galaxy77 2.8k
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3.6k
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Answer: Answer: bcftools multiple commands
3.0 years ago by 4galaxy77 2.8k
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1.2k
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Answer: Answer: Only output SNPs in bcftools
3.0 years ago by 4galaxy77 2.8k
4
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4.8k
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Answer: Answer: Is there a tool to draw local ancestry plots per chromosome?
3.0 years ago by 4galaxy77 2.8k
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2.6k
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Answer: Answer: HELP! extract variants for individual sample IDs in a multisample VCF
3.0 years ago by 4galaxy77 2.8k
0
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2.2k
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Answer: Answer: How do I filter a multi-individual BCF file for genotype probabilities
3.0 years ago by 4galaxy77 2.8k
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725
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Answer: Answer: heterozygosity
3.0 years ago by 4galaxy77 2.8k
3
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59k
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Answer: Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.0 years ago by 43k • written 3.0 years ago by 2.8k
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745
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Answer: Answer: Trio haplotype information in the 1000 Genome Project
3.0 years ago by 4galaxy77 2.8k
0
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1.5k
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Answer: Answer: Possible to merge three plink bim, bed and fam files?
3.0 years ago by 4galaxy77 2.8k
3
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Answer: Answer: Remove 2nd colon and rest of the values in a dataframe using R/ Unix
3.0 years ago by 4galaxy77 2.8k
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1.5k
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Answer: Answer: Looking for a Whole Genome Sequencing GrCH38 Control group of roughly 250 sample
3.0 years ago by 4galaxy77 2.8k
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2.1k
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Answer: Answer: Future of Microarrays
3.1 years ago by 4galaxy77 2.8k
4
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2.5k
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Answer: Answer: 1000 genomes project reference panel - GRCh38
3.1 years ago by 4galaxy77 2.8k
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1.8k
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Answer: Answer: How to calculate frequency of heterozygous SNPs in multisample VCF file and to
3.1 years ago by 4galaxy77 2.8k
3
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1.8k
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Answer: Answer: What are some major historic shifts in bioinformatic methodologies?
3.1 years ago by 4galaxy77 2.8k
1
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3.9k
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Answer: A: Split VCF into separate VCFs by SNP count
3.1 years ago by 4galaxy77 2.8k
0
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0
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1.3k
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Answer: A: extract gnomAD (exome/genome) all variant list in a specific gene (hg19)
3.1 years ago by 4galaxy77 2.8k
0
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1
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1.6k
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Answer: A: setting the missing genotypes as 0/0
3.2 years ago by 4galaxy77 2.8k
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621
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Answer: C: VCF keep only genotyped positions
3.2 years ago by 4galaxy77 2.8k
1
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1
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1.7k
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Answer: C: Beagle Conform-gt Java Error
3.2 years ago by 4galaxy77 2.8k
3
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1
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3.6k
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Answer: A: Pruning a VCF file and extracting pruned in snps using bcftools
3.2 years ago by 4galaxy77 2.8k
2
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1
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3.9k
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Answer: A: What programming language do you use the most in your work? Which one do you lik
3.2 years ago by 4galaxy77 2.8k
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2.1k
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Answer: A: PCA on subset of patients, from 22 separate chromosome vcf files
3.2 years ago by 4galaxy77 2.8k
4
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2
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3.3k
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Answer: A: Determine the sex of a sample from a .vcf
3.3 years ago by 4galaxy77 2.8k
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2.6k
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Answer: A: Multiple replicates and ggplot
3.3 years ago by 4galaxy77 2.8k
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0
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17k
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Answer: A: How Can I Count Snps In My Final Vcf Files
3.3 years ago by 4galaxy77 2.8k
1
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0
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4.1k
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Answer: A: Principle component analysis using VCF file as input.
3.3 years ago by 4galaxy77 2.8k
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1
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2.0k
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Answer: A: How to convert a VCF with genotypes and phasing info to list of haplotypes for R
3.3 years ago by 4galaxy77 2.8k
1
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0
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739
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Answer: A: variant filtering based on high quality reference - removing false positives
3.3 years ago by 4galaxy77 2.8k
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