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manuel.belmadani • 830
Status: New
Handle: @manuel.belmadani20540
Reputation: 830
Email: m*********@gmail.com
Joined: 17 months ago
Twitter: pragmatwit
Google Scholar: CaXlIcUAAAAJ
Last seen: 18 months ago
Location: Canada

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Comment: C: All result in one file
17 months ago
manuel.belmadani • 830
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Answer: A: All result in one file
17 months ago
manuel.belmadani • 830
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238
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Answer: A: How to obtain transcript level TPM using stringtie?
17 months ago
manuel.belmadani • 830
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249
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Comment: C: Fastq to BAM
18 months ago
manuel.belmadani • 830
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249
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Comment: C: Fastq to BAM
18 months ago
manuel.belmadani • 830
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Comment: C: How to run several one-way ANOVAs in R using on different categories?
18 months ago
manuel.belmadani • 830
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Answer: A: Question: How to run several one-way ANOVAs in R using on different categories?
18 months ago
manuel.belmadani • 830
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188
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Comment: C: intersection for several file
18 months ago
manuel.belmadani • 830
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Comment: C: intersection for several file
18 months ago
manuel.belmadani • 830
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Answer: A: y-axis on Volcano plot
18 months ago
manuel.belmadani • 830
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Answer: A: intersection for several file
18 months ago
manuel.belmadani • 830
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Comment: C: Trimmomatic output file Issue
18 months ago
manuel.belmadani • 830
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Comment: C: Empty BAM file upon mapping with STAR
18 months ago
manuel.belmadani • 830
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138
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Comment: C: Empty BAM file upon mapping with STAR
18 months ago
manuel.belmadani • 830
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138
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Answer: A: Empty BAM file upon mapping with STAR
18 months ago
manuel.belmadani • 830
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Comment: C: How bad is it if chromosome patches are included in STAR alignmnet, and is it po
18 months ago
manuel.belmadani • 830
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Answer: A: Code golf: detecting homopolymers of length N in the (human) genome
18 months ago
manuel.belmadani • 830
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219
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Answer: A: What is the statistics test on proportion data
18 months ago
manuel.belmadani • 830
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Comment: C: Generating FPKM matrix accross all samples after stringtie
19 months ago
manuel.belmadani • 830
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256
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Answer: A: gnomAD: query utilitites
19 months ago
manuel.belmadani • 830
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258
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Answer: A: RPM data analysis with DESeq2
19 months ago
manuel.belmadani • 830
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313
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Answer: A: HGVS format to VCF from portal.gdc.cancer.gov
19 months ago
manuel.belmadani • 830
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Comment: C: random sampling genome.fa
19 months ago
manuel.belmadani • 830
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Answer: A: In R or Python, How do I implement an allele sequence "autocomplete" tool given
19 months ago
manuel.belmadani • 830
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268
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Answer: A: random sampling genome.fa
19 months ago
manuel.belmadani • 830
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641
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Comment: C: How to extract total allele frequency from gnomAD annotation
19 months ago
manuel.belmadani • 830
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358
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Comment: C: Download hundreds of genes' variant csv from gnomAD
20 months ago
manuel.belmadani • 830
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181
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Comment: C: Making a ped file
20 months ago
manuel.belmadani • 830
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193
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Answer: A: Looking for tool recommendations for text mining
20 months ago
manuel.belmadani • 830
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272
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Comment: C: ExAC non-TCGA mean
20 months ago
manuel.belmadani • 830
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234
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Comment: C: RNA seq pipeline on the cloud
20 months ago
manuel.belmadani • 830
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248
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Comment: C: Are the Fastq files content is truly random
20 months ago
manuel.belmadani • 830
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287
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Answer: A: How to combine multiple data files by column names?
20 months ago
manuel.belmadani • 830
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199
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Comment: C: variant REF-ALT conversion to HGVS.c
20 months ago
manuel.belmadani • 830
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233
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Comment: C: How can I do mass spectra in silico
20 months ago
manuel.belmadani • 830
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233
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Comment: C: How can I do mass spectra in silico
20 months ago
manuel.belmadani • 830
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227
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Comment: C: Is there any benefit in sorting a sam/bam file by coordinates vs. queryname?
20 months ago
manuel.belmadani • 830
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209
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Comment: C: search multiple sequences in multiple fastqs
20 months ago
manuel.belmadani • 830
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209
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Comment: C: search multiple sequences in multiple fastqs
20 months ago
manuel.belmadani • 830
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209
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Comment: C: search multiple sequences in multiple fastqs
20 months ago
manuel.belmadani • 830
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408
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Comment: C: How to create a tab delimited file?
21 months ago
manuel.belmadani • 830
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207
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Answer: A: Simple FASTQ/A manipulation... how to add a single adapter sequence to 3' of all
21 months ago
manuel.belmadani • 830
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207
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Comment: C: Simple FASTQ/A manipulation... how to add a single adapter sequence to 5' of all
21 months ago
manuel.belmadani • 830
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408
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Answer: A: How to create a tab delimited file?
21 months ago
manuel.belmadani • 830
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329
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Comment: C: Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not ali
21 months ago
manuel.belmadani • 830
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Answer: C: Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not ali
21 months ago
manuel.belmadani • 830
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329
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Comment: C: Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not ali
21 months ago
manuel.belmadani • 830
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301
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Answer: A: Where to Download Cancer Raw Reads (fastq)?
21 months ago
manuel.belmadani • 830
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204
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Answer: A: Understanding Bowtie output
21 months ago
manuel.belmadani • 830
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231
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NCBI Saccharomyces cerevisiae GENE_INFO has child taxon ID instead of parent.
Taxonomy Yeast NCBI
21 months ago
manuel.belmadani • 830
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345
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Answer: A: Creation of a VCF file from scratch with python
21 months ago
manuel.belmadani • 830
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283
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Answer: A: Cannot identify software used to make image
21 months ago
manuel.belmadani • 830
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283
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Comment: C: Cannot identify software used to make image
21 months ago
manuel.belmadani • 830
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394
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Answer: A: Principal component analysis: PC2 contribute more to variance than PC1?
21 months ago
manuel.belmadani • 830
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437
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Answer: C: BSc Thesis "Machine learning application in diagnosis of a genetic diseases" - I
21 months ago
manuel.belmadani • 830
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641
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Comment: C: How to extract total allele frequency from gnomAD annotation
21 months ago
manuel.belmadani • 830
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343
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
21 months ago
manuel.belmadani • 830
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641
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Answer: A: How to extract total allele frequency from gnomAD annotation
21 months ago
manuel.belmadani • 830
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1
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343
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
21 months ago
manuel.belmadani • 830
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343
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
21 months ago
manuel.belmadani • 830
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343
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
21 months ago
manuel.belmadani • 830
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343
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Answer: A: how to go from aligning forward when analyzing whole exome sequencing
21 months ago
manuel.belmadani • 830
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343
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
21 months ago
manuel.belmadani • 830
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1
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343
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
21 months ago
manuel.belmadani • 830
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382
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Comment: C: How to extract the last 1000 nt from a group of sequences in a FASTA file?
21 months ago
manuel.belmadani • 830
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382
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Comment: C: How to extract the last 1000 nt from a group of sequences in a FASTA file?
21 months ago
manuel.belmadani • 830
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382
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Comment: C: How to extract the last 1000 nt from a group of sequences in a FASTA file?
21 months ago
manuel.belmadani • 830
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448
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Comment: C: Collapsing probesets to genes on WGCNA
22 months ago
manuel.belmadani • 830
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513
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Comment: C: Seeking for a Linux based script ?
22 months ago
manuel.belmadani • 830
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513
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Comment: C: Seeking for a Linux based script ?
22 months ago
manuel.belmadani • 830
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187
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Comment: C: Mate mismatch errors in 1000genomes CRAM files
22 months ago
manuel.belmadani • 830
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272
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Answer: A: Remove low quality base calls from reads
22 months ago
manuel.belmadani • 830
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513
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Comment: C: Seeking for a Linux based script ?
22 months ago
manuel.belmadani • 830
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513
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Comment: C: Seeking for a Linux based script ?
22 months ago
manuel.belmadani • 830
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513
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Answer: A: Seeking for a Linux based script ?
22 months ago
manuel.belmadani • 830
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Answer: A: Reproducing this plot in R
22 months ago
manuel.belmadani • 830
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574
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Comment: C: Set point colour based on threshold in scatter plot
22 months ago
manuel.belmadani • 830
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314
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Answer: A: PolyPhen Humdiv vs HumVar discrepancies
22 months ago
manuel.belmadani • 830
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770
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Answer: A: same transcript id with STAR quant mode
22 months ago
manuel.belmadani • 830
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606
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Answer: A: STAR or Bowtie for small RNA seq?
22 months ago
manuel.belmadani • 830
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260
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Answer: A: Noob question about reading SNP results from BAM file visually
22 months ago
manuel.belmadani • 830
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290
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Comment: C: Correlation matrix between enhancers and promoters (human)?
22 months ago
manuel.belmadani • 830
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239
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Answer: A: Regular expression to extract mutations type
22 months ago
manuel.belmadani • 830
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Comment: C: Help with statistics for treatment control analysis using R
22 months ago
manuel.belmadani • 830
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267
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Answer: A: Help with statistics for treatment control analysis using R
22 months ago
manuel.belmadani • 830
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589
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Answer: A: Bulk download of entire BioProject SRA
22 months ago
manuel.belmadani • 830
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423
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Comment: C: How to speed up trimming using trim galorer
22 months ago
manuel.belmadani • 830
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274
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Answer: A: Denovo variant detection in trios using only 3 gVCF files
22 months ago
manuel.belmadani • 830
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423
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Answer: A: How to speed up trimming using trim galorer
22 months ago
manuel.belmadani • 830
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274
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Answer: A: Downloading BAM files and converting to fastq
22 months ago
manuel.belmadani • 830
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477
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Answer: A: Shannon Entropy for DNA
22 months ago
manuel.belmadani • 830
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426
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Comment: C: Stringtie elimination of important transcripts
22 months ago
manuel.belmadani • 830
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Comment: C: updated clinical variant annotation software and databases
22 months ago
manuel.belmadani • 830
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426
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Answer: A: Stringtie elimination of important transcripts
22 months ago
manuel.belmadani • 830
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387
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Answer: A: updated clinical variant annotation software and databases
22 months ago
manuel.belmadani • 830
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817
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Answer: A: Interpreting stats from gnomAD/ ExAC reference population
2.3 years ago
manuel.belmadani • 830
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465
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Answer: A: annotate and analyse mutation from cosmic
2.3 years ago
manuel.belmadani • 830
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282
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Answer: A: Prokaryotic protein binding motifs databases
2.3 years ago
manuel.belmadani • 830
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1.9k
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Answer: A: Generating FPKM matrix accross all samples after stringtie
2.4 years ago
manuel.belmadani • 830
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1.6k
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Comment: C: STAR alignment error- Segmentation fault (core dumped)
2.4 years ago
manuel.belmadani • 830
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