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manuel.belmadani • 830
Status: New
Handle: @manuel.belmadani20540
Reputation: 830
Email: m*********@gmail.com
Joined: 13 months ago
Twitter: pragmatwit
Google Scholar: CaXlIcUAAAAJ
Last seen: 14 months ago
Location: Canada

Posts Awards
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220
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Comment: C: All result in one file
13 months ago
manuel.belmadani • 830
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220
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Answer: A: All result in one file
13 months ago
manuel.belmadani • 830
2
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235
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Answer: A: How to obtain transcript level TPM using stringtie?
14 months ago
manuel.belmadani • 830
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245
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Comment: C: Fastq to BAM
14 months ago
manuel.belmadani • 830
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245
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Comment: C: Fastq to BAM
14 months ago
manuel.belmadani • 830
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191
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Comment: C: How to run several one-way ANOVAs in R using on different categories?
14 months ago
manuel.belmadani • 830
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191
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Answer: A: Question: How to run several one-way ANOVAs in R using on different categories?
14 months ago
manuel.belmadani • 830
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185
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Comment: C: intersection for several file
14 months ago
manuel.belmadani • 830
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185
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Comment: C: intersection for several file
14 months ago
manuel.belmadani • 830
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100
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Answer: A: y-axis on Volcano plot
14 months ago
manuel.belmadani • 830
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185
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Answer: A: intersection for several file
14 months ago
manuel.belmadani • 830
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185
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Comment: C: Trimmomatic output file Issue
14 months ago
manuel.belmadani • 830
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137
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Comment: C: Empty BAM file upon mapping with STAR
14 months ago
manuel.belmadani • 830
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137
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Comment: C: Empty BAM file upon mapping with STAR
14 months ago
manuel.belmadani • 830
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137
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Answer: A: Empty BAM file upon mapping with STAR
14 months ago
manuel.belmadani • 830
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116
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Comment: C: How bad is it if chromosome patches are included in STAR alignmnet, and is it po
14 months ago
manuel.belmadani • 830
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359
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Answer: A: Code golf: detecting homopolymers of length N in the (human) genome
14 months ago
manuel.belmadani • 830
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1
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214
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Answer: A: What is the statistics test on proportion data
14 months ago
manuel.belmadani • 830
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1.9k
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Comment: C: Generating FPKM matrix accross all samples after stringtie
15 months ago
manuel.belmadani • 830
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254
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Answer: A: gnomAD: query utilitites
15 months ago
manuel.belmadani • 830
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256
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Answer: A: RPM data analysis with DESeq2
15 months ago
manuel.belmadani • 830
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310
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Answer: A: HGVS format to VCF from portal.gdc.cancer.gov
16 months ago
manuel.belmadani • 830
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268
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Comment: C: random sampling genome.fa
16 months ago
manuel.belmadani • 830
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242
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Answer: A: In R or Python, How do I implement an allele sequence "autocomplete" tool given
16 months ago
manuel.belmadani • 830
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268
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Answer: A: random sampling genome.fa
16 months ago
manuel.belmadani • 830
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641
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Comment: C: How to extract total allele frequency from gnomAD annotation
16 months ago
manuel.belmadani • 830
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358
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Comment: C: Download hundreds of genes' variant csv from gnomAD
16 months ago
manuel.belmadani • 830
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179
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Comment: C: Making a ped file
16 months ago
manuel.belmadani • 830
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193
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Answer: A: Looking for tool recommendations for text mining
16 months ago
manuel.belmadani • 830
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270
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Comment: C: ExAC non-TCGA mean
16 months ago
manuel.belmadani • 830
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232
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Comment: C: RNA seq pipeline on the cloud
16 months ago
manuel.belmadani • 830
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243
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Comment: C: Are the Fastq files content is truly random
16 months ago
manuel.belmadani • 830
3
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287
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Answer: A: How to combine multiple data files by column names?
16 months ago
manuel.belmadani • 830
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196
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Comment: C: variant REF-ALT conversion to HGVS.c
16 months ago
manuel.belmadani • 830
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233
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Comment: C: How can I do mass spectra in silico
16 months ago
manuel.belmadani • 830
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1
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233
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Comment: C: How can I do mass spectra in silico
16 months ago
manuel.belmadani • 830
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227
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Comment: C: Is there any benefit in sorting a sam/bam file by coordinates vs. queryname?
17 months ago
manuel.belmadani • 830
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209
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Comment: C: search multiple sequences in multiple fastqs
17 months ago
manuel.belmadani • 830
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209
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Comment: C: search multiple sequences in multiple fastqs
17 months ago
manuel.belmadani • 830
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209
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Comment: C: search multiple sequences in multiple fastqs
17 months ago
manuel.belmadani • 830
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406
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Comment: C: How to create a tab delimited file?
17 months ago
manuel.belmadani • 830
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207
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Answer: A: Simple FASTQ/A manipulation... how to add a single adapter sequence to 3' of all
17 months ago
manuel.belmadani • 830
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207
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Comment: C: Simple FASTQ/A manipulation... how to add a single adapter sequence to 5' of all
17 months ago
manuel.belmadani • 830
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406
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Answer: A: How to create a tab delimited file?
17 months ago
manuel.belmadani • 830
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329
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Comment: C: Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not ali
17 months ago
manuel.belmadani • 830
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329
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Answer: C: Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not ali
17 months ago
manuel.belmadani • 830
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1
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329
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Comment: C: Why my Hisat2 result is 0% aligned concordantly and HTseq result is 100% not ali
17 months ago
manuel.belmadani • 830
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301
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Answer: A: Where to Download Cancer Raw Reads (fastq)?
17 months ago
manuel.belmadani • 830
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204
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Answer: A: Understanding Bowtie output
17 months ago
manuel.belmadani • 830
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1
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230
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NCBI Saccharomyces cerevisiae GENE_INFO has child taxon ID instead of parent.
Taxonomy Yeast NCBI
17 months ago
manuel.belmadani • 830
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344
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Answer: A: Creation of a VCF file from scratch with python
17 months ago
manuel.belmadani • 830
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281
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Answer: A: Cannot identify software used to make image
17 months ago
manuel.belmadani • 830
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281
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Comment: C: Cannot identify software used to make image
17 months ago
manuel.belmadani • 830
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381
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Answer: A: Principal component analysis: PC2 contribute more to variance than PC1?
17 months ago
manuel.belmadani • 830
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436
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Answer: C: BSc Thesis "Machine learning application in diagnosis of a genetic diseases" - I
17 months ago
manuel.belmadani • 830
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641
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Comment: C: How to extract total allele frequency from gnomAD annotation
18 months ago
manuel.belmadani • 830
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342
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
18 months ago
manuel.belmadani • 830
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1
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641
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Answer: A: How to extract total allele frequency from gnomAD annotation
18 months ago
manuel.belmadani • 830
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1
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342
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
18 months ago
manuel.belmadani • 830
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342
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
18 months ago
manuel.belmadani • 830
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342
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
18 months ago
manuel.belmadani • 830
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2
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342
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Answer: A: how to go from aligning forward when analyzing whole exome sequencing
18 months ago
manuel.belmadani • 830
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1
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342
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
18 months ago
manuel.belmadani • 830
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1
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342
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Comment: C: how to go from aligning forward when analyzing whole exome sequencing
18 months ago
manuel.belmadani • 830
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379
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Comment: C: How to extract the last 1000 nt from a group of sequences in a FASTA file?
18 months ago
manuel.belmadani • 830
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2
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379
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Comment: C: How to extract the last 1000 nt from a group of sequences in a FASTA file?
18 months ago
manuel.belmadani • 830
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0
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379
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Comment: C: How to extract the last 1000 nt from a group of sequences in a FASTA file?
18 months ago
manuel.belmadani • 830
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444
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Comment: C: Collapsing probesets to genes on WGCNA
18 months ago
manuel.belmadani • 830
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1
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511
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Comment: C: Seeking for a Linux based script ?
18 months ago
manuel.belmadani • 830
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511
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Comment: C: Seeking for a Linux based script ?
18 months ago
manuel.belmadani • 830
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187
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Comment: C: Mate mismatch errors in 1000genomes CRAM files
18 months ago
manuel.belmadani • 830
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272
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Answer: A: Remove low quality base calls from reads
18 months ago
manuel.belmadani • 830
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2
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511
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Comment: C: Seeking for a Linux based script ?
18 months ago
manuel.belmadani • 830
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1
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511
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Comment: C: Seeking for a Linux based script ?
18 months ago
manuel.belmadani • 830
1
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1
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511
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Answer: A: Seeking for a Linux based script ?
18 months ago
manuel.belmadani • 830
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573
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Answer: A: Reproducing this plot in R
18 months ago
manuel.belmadani • 830
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573
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Comment: C: Set point colour based on threshold in scatter plot
18 months ago
manuel.belmadani • 830
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313
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Answer: A: PolyPhen Humdiv vs HumVar discrepancies
18 months ago
manuel.belmadani • 830
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768
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Answer: A: same transcript id with STAR quant mode
18 months ago
manuel.belmadani • 830
3
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3
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606
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Answer: A: STAR or Bowtie for small RNA seq?
18 months ago
manuel.belmadani • 830
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1
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260
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Answer: A: Noob question about reading SNP results from BAM file visually
18 months ago
manuel.belmadani • 830
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290
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Comment: C: Correlation matrix between enhancers and promoters (human)?
18 months ago
manuel.belmadani • 830
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238
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Answer: A: Regular expression to extract mutations type
18 months ago
manuel.belmadani • 830
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267
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Comment: C: Help with statistics for treatment control analysis using R
18 months ago
manuel.belmadani • 830
4
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1
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267
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Answer: A: Help with statistics for treatment control analysis using R
18 months ago
manuel.belmadani • 830
4
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588
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Answer: A: Bulk download of entire BioProject SRA
18 months ago
manuel.belmadani • 830
2
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422
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Comment: C: How to speed up trimming using trim galorer
18 months ago
manuel.belmadani • 830
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274
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Answer: A: Denovo variant detection in trios using only 3 gVCF files
18 months ago
manuel.belmadani • 830
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422
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Answer: A: How to speed up trimming using trim galorer
18 months ago
manuel.belmadani • 830
2
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1
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274
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Answer: A: Downloading BAM files and converting to fastq
18 months ago
manuel.belmadani • 830
2
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473
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Answer: A: Shannon Entropy for DNA
18 months ago
manuel.belmadani • 830
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1
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426
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Comment: C: Stringtie elimination of important transcripts
18 months ago
manuel.belmadani • 830
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386
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Comment: C: updated clinical variant annotation software and databases
18 months ago
manuel.belmadani • 830
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426
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Answer: A: Stringtie elimination of important transcripts
18 months ago
manuel.belmadani • 830
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1
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386
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Answer: A: updated clinical variant annotation software and databases
18 months ago
manuel.belmadani • 830
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0
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816
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Answer: A: Interpreting stats from gnomAD/ ExAC reference population
23 months ago
manuel.belmadani • 830
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465
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Answer: A: annotate and analyse mutation from cosmic
23 months ago
manuel.belmadani • 830
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282
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Answer: A: Prokaryotic protein binding motifs databases
24 months ago
manuel.belmadani • 830
3
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2
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1.9k
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Answer: A: Generating FPKM matrix accross all samples after stringtie
2.1 years ago
manuel.belmadani • 830
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0
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1.6k
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Comment: C: STAR alignment error- Segmentation fault (core dumped)
2.1 years ago
manuel.belmadani • 830
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