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alolex • 890
Status: New
Handle: @alolex18428
Reputation: 890
Email: a*******@vcu.edu
Joined: 8 months ago
Last seen: 9 months ago
Location: United States

I am a Bioinformatics Specialist with an educational background in Computer Science and extensive experience with analyzing microarray and HTS data.  I am also very familiar with accessing and analyzing public and private data from The Cancer Genome Atlas (TCGA).  I love to program in R and bash--bash mostly because it can weave together programs written in any language to create seamless automated workflows.  

Comment: C: How To Filter Mapped Reads With Samtools
3 Votes | 1 Reply
4.8 years ago
alolex
• 890
• updated 19 months ago
RamRS
21k
Comment: C: Extract Sub-Set Of Regions From Vcf File
0 Votes | 0 Replies
3.6 years ago
alolex
• 890
Comment: C: How To Convert Vcf File To Plink Ped Format?
1 Vote | 1 Reply
3.9 years ago
alolex
• 890
Comment: C: how i can put bowtie2 with tophat2 in the path?
1 Vote | 3 Replies
4.5 years ago
alolex
• 890
Answer: A: Cancer cell line WGS
0 Votes | 1 Reply
4.6 years ago
alolex
• 890
Answer: A: Needed appropriate journal to submit my paper
0 Votes | 0 Replies
4.6 years ago
alolex
• 890
Answer: A: Draw multiple heatmaps
1 Vote | 0 Replies
4.6 years ago
alolex
• 890
Answer: A: How to filter genes by gene size
1 Vote | 0 Replies
4.6 years ago
alolex
• 890
Comment: C: Converting full Protein names into Gene ID
0 Votes | 0 Replies
4.6 years ago
alolex
• 890
Answer: A: Calculate FPKM value from bam files
0 Votes | 0 Replies
4.6 years ago
alolex
• 890
Answer: A: Methylation scores from TCGA
2 Votes | 0 Replies
4.6 years ago
alolex
• 890
Answer: A: Gene Identifiers and Databases
3 Votes | 0 Replies
4.6 years ago
alolex
• 890
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
1 Vote | 0 Replies
4.6 years ago
alolex
• 890
Answer: A: Pdb file help: renumber residue manually
1 Vote | 0 Replies
4.6 years ago
alolex
• 890
Comment: C: having a more informative annotation file
0 Votes | 1 Reply
4.6 years ago
alolex
• 890
Comment: C: having a more informative annotation file
0 Votes | 0 Replies
4.6 years ago
alolex
• 890
Comment: C: having a more informative annotation file
1 Vote | 0 Replies
4.6 years ago
alolex
• 890
Answer: A: having a more informative annotation file
1 Vote | 1 Reply
4.6 years ago
alolex
• 890
Comment: C: Extract reads within given region, and their mates
1 Vote | 0 Replies
4.6 years ago
alolex
• 890
Comment: C: Extract reads within given region, and their mates
4 Votes | 0 Replies
4.6 years ago
alolex
• 890
Comment: C: TCGA gene expression
0 Votes | 1 Reply
4.6 years ago
alolex
• 890
Answer: A: TCGA gene expression
0 Votes | 0 Replies
4.6 years ago
alolex
• 890
Comment: C: TCGA gene expression
0 Votes | 2 Replies
4.6 years ago
alolex
• 890
Comment: C: TCGA gene expression
0 Votes | 1 Reply
4.6 years ago
alolex
• 890
Comment: C: TCGA gene expression
0 Votes | 1 Reply
4.6 years ago
alolex
• 890
Answer: A: DESeq pvalue>0.05 qvalue=1
1 Vote | 1 Reply
4.6 years ago
alolex
• 890
Comment: C: TCGA gene expression
1 Vote | 2 Replies
4.6 years ago
alolex
• 890
Answer: A: Microarray Annotation problems
1 Vote | 0 Replies
4.6 years ago
alolex
• 890
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