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Showing :
answers
0
votes
1
reply
3.1k
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Answer:
A: Assemble short reads based on k-mers
8.8 years ago by
thackl
★ 3.0k
2
votes
0
replies
3.0k
views
Answer:
Answer: Cases where indexing is efficient for read retrieval
updated 18 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
3
votes
1
reply
4.3k
views
Answer:
A: perl count fasta sequences
8.9 years ago by
thackl
★ 3.0k
2
votes
1
reply
3.7k
views
Answer:
A: Maximum allowed (mismatches) SNPs/INDELs in one read in Bowtie2 alignment
8.9 years ago by
thackl
★ 3.0k
0
votes
1
reply
7.0k
views
Answer:
A: How to align DNA reads against a database of protein references
8.9 years ago by
thackl
★ 3.0k
1
vote
1
reply
2.5k
views
Answer:
A: Which Flash output file do you use in Soap denovo assembly
8.9 years ago by
thackl
★ 3.0k
4
votes
0
replies
4.4k
views
Answer:
Answer: fastq to fasta perl
updated 2.2 years ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
0
votes
0
replies
5.7k
views
Answer:
A: view of a circular viral genome and its annotation
8.9 years ago by
thackl
★ 3.0k
7
votes
0
replies
6.6k
views
Answer:
A: Where did EMBOSS go?
8.9 years ago by
thackl
★ 3.0k
4
votes
1
reply
5.2k
views
Answer:
Answer: the defination of insert size in RNA-seq, including the length of read, or not?
updated 17 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
2
votes
1
reply
3.4k
views
Answer:
Answer: which tools you use to generate artificial NGS?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
thackl
★ 3.0k
2
votes
2
replies
2.8k
views
Answer:
A: Converting back a consensus sequence
8.9 years ago by
thackl
★ 3.0k
1
vote
0
replies
3.6k
views
Answer:
A: BLASR Clipping for Pacbio Subreads
8.9 years ago by
thackl
★ 3.0k
1
vote
1
reply
1.8k
views
Answer:
Answer: Any tools for extracting aligned part of genome from sam or bam file
updated 16 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
3
votes
1
reply
6.9k
views
Answer:
Answer: Estimating SAM file size from fastq
updated 16 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
3
votes
0
replies
3.5k
views
Answer:
Answer: PacBio data assembly with Celera
updated 16 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
2
votes
1
reply
5.1k
views
Answer:
Answer: PacBio Sequence name
updated 16 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
0
votes
0
replies
6.0k
views
Answer:
Answer: Short Sequence BLAST Search with Gaps
updated 16 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
38
votes
1
reply
33k
views
Answer:
Answer: Paired-end reads - what is what?
updated 16 months ago by
Ram
43k • written 9.0 years ago by
thackl
★ 3.0k
4
votes
0
replies
2.9k
views
Answer:
Answer: Why a de novo assembler is not a transcript assembler?
updated 16 months ago by
Ram
43k • written 8.9 years ago by
thackl
★ 3.0k
6
votes
1
reply
6.0k
views
Answer:
A: How to run velvet multithreaded?
9.0 years ago by
thackl
★ 3.0k
0
votes
0
replies
3.9k
views
Answer:
Answer: converting a fasta database to blastp database
updated 2.3 years ago by
Ram
43k • written 9.1 years ago by
thackl
★ 3.0k
7
votes
0
replies
4.4k
views
Answer:
A: PacBio coverage question for a plant genome
9.1 years ago by
thackl
★ 3.0k
1
vote
2
replies
4.5k
views
Answer:
A: How to convert a genebank file to a gff file
9.1 years ago by
thackl
★ 3.0k
6
votes
0
replies
15k
views
Answer:
A: How does kmer length affect total assembly size?
9.1 years ago by
thackl
★ 3.0k
1
vote
0
replies
6.2k
views
Answer:
A: Free Linux server for bio-computing?
9.1 years ago by
thackl
★ 3.0k
2
votes
1
reply
2.4k
views
Answer:
A: De novo assembly around 1 short length (<100bp) known sequence.
9.1 years ago by
thackl
★ 3.0k
1
vote
1
reply
3.3k
views
Answer:
A: Is there any tool or script to evaluate transcriptome assembly quality in terms
9.1 years ago by
thackl
★ 3.0k
3
votes
1
reply
7.1k
views
Answer:
Answer: Error in sam to bam conversion after bowtie alignment
updated 23 months ago by
Ram
43k • written 9.2 years ago by
thackl
★ 3.0k
1
vote
0
replies
1.7k
views
Answer:
A: an image with the conservation of residues
9.2 years ago by
thackl
★ 3.0k
3
votes
1
reply
2.6k
views
Answer:
A: Convert FRG files back to fastq paired end reads
9.2 years ago by
thackl
★ 3.0k
2
votes
1
reply
8.6k
views
Answer:
Answer: color a sequence alignment
updated 23 months ago by
Ram
43k • written 9.2 years ago by
thackl
★ 3.0k
1
vote
1
reply
2.3k
views
Answer:
Answer: How to align long primary transcript sequences?
updated 24 months ago by
Ram
43k • written 9.2 years ago by
thackl
★ 3.0k
0
votes
1
reply
10k
views
Answer:
A: How can I shuffle a set of sequences while preserving the dinucleotide distribut
9.2 years ago by
thackl
★ 3.0k
1
vote
0
replies
9.7k
views
Answer:
Answer: More loose criteria for bowtie2 mapping
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
thackl
★ 3.0k
0
votes
0
replies
2.8k
views
Answer:
A: simulation of DNA-Seq paired-end data
9.2 years ago by
thackl
★ 3.0k
7
votes
2
replies
3.4k
views
Answer:
A: How can I hide a annoying description in IGV?
9.2 years ago by
thackl
★ 3.0k
3
votes
1
reply
5.9k
views
Answer:
A: Which peak is homozygous and heterozygous in Kmer plot for Genome estimation
9.3 years ago by
thackl
★ 3.0k
4
votes
1
reply
5.1k
views
Answer:
Answer: paired end sequencing, sequence distance
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
thackl
★ 3.0k
0
votes
0
replies
4.0k
views
Answer:
A: How to separate or bin a mix of eukaryote and prokaryote DNA?
9.3 years ago by
thackl
★ 3.0k
1
vote
1
reply
13k
views
Answer:
Answer: Pacbio: extract fastq from h5 file based on quality filtering
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
thackl
★ 3.0k
2
votes
1
reply
2.3k
views
Answer:
A: splitting fasta sequences into variables
9.3 years ago by
thackl
★ 3.0k
2
votes
0
replies
4.0k
views
Answer:
A: Scan a large genome for the ocurrence of a single sequence motif?
9.3 years ago by
thackl
★ 3.0k
11
votes
2
replies
16k
views
Answer:
Answer: What tools you use or know for PacBio Long Read error correction?
updated 3.1 years ago by
Ram
43k • written 9.3 years ago by
thackl
★ 3.0k
2
votes
0
replies
3.0k
views
Answer:
A: minia assembler - counting kmers 'gatb::core::system::Exception'
9.4 years ago by
thackl
★ 3.0k
95 results • Page
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