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Answer: Answer: Which alignment for whole bacterial genomes for phylogenetic tree?
6 months ago by michael.ante ★ 3.8k
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1
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2.5k
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Answer: A: How to interpret the differences of read counts using htseq and feature counts?
4.3 years ago by michael.ante ★ 3.8k
0
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1
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1.7k
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Answer: A: Error in piRNA gtf file while featurecounts step in STAR aligner?
4.4 years ago by michael.ante ★ 3.8k
2
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1
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988
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Answer: C: Scaleable trimming of GenBank sequences?
4.4 years ago by michael.ante ★ 3.8k
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1.5k
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Answer: A: Transcription factor target gene
4.4 years ago by michael.ante ★ 3.8k
1
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1
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2.7k
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Answer: A: two questions in loading data
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 3.8k
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1
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2.4k
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Answer: A: Tophat, low alignement left read
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 3.8k
2
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1
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2.0k
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Answer: A: Joining two files with multiple columns
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 3.8k
9
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1
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2.9k
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Answer: A: Can FPKM be added?
updated 4.5 years ago by 43k • written 8.5 years ago by ★ 3.8k
3
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1
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2.0k
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Answer: C: awk, copy and paste single line command
updated 4.5 years ago by 87k • written 4.5 years ago by ★ 3.8k
3
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1
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3.0k
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Answer: A: error in getting sorted bam
updated 4.5 years ago by 43k • written 8.7 years ago by ★ 3.8k
14
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5
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31k
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Answer: A: Converstion of BED with scores into bigWig
updated 4.5 years ago by 43k • written 8.8 years ago by ★ 3.8k
1
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1
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1.2k
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Answer: A: Interpret genome alignment results
4.5 years ago by michael.ante ★ 3.8k
0
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0
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3.7k
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Answer: A: is 0-based start and 1-based end of bed format not compatible with htseq-count?
4.6 years ago by michael.ante ★ 3.8k
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3.0k
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Answer: A: sequence length distribution
4.6 years ago by michael.ante ★ 3.8k
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0
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940
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Answer: A: Bed file of union of all transcripts for a set of genes
4.6 years ago by michael.ante ★ 3.8k
1
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0
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1.9k
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Answer: A: How to count total small RNAs (known and novel) in my aligned reads?
4.6 years ago by michael.ante ★ 3.8k
3
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1
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1.3k
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Answer: A: BAM File size increased after extracting unique reads
4.7 years ago by michael.ante ★ 3.8k
0
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0
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1.1k
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Answer: A: hisat2-build half done
5.0 years ago by michael.ante ★ 3.8k
0
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2
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2.6k
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Answer: A: mash configure error --with-gsl can not find gsl
updated 5.0 years ago by 142k • written 5.0 years ago by ★ 3.8k
1
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1
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2.2k
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Answer: A: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
5.1 years ago by michael.ante ★ 3.8k
3
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1
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1.1k
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Answer: C: Inconsistent number Pandaseq vs grep
5.1 years ago by michael.ante ★ 3.8k
2
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0
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1.8k
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Answer: A: Htseq-count result assistance
5.1 years ago by michael.ante ★ 3.8k
0
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1
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5.0k
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Answer: C: STAR fusion error
5.2 years ago by michael.ante ★ 3.8k
1
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0
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1.3k
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Answer: A: STAR and HTSeq command line parameters for 3' mRNA-Seq data
5.2 years ago by michael.ante ★ 3.8k
6
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0
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6.6k
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Answer: C: How do I know if I have DNA contamination in RNA-seq data?
5.2 years ago by michael.ante ★ 3.8k
2
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2
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2.1k
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Answer: A: HTseq code error repeatedly
5.2 years ago by michael.ante ★ 3.8k
0
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1
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1.3k
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Answer: A: count file zero
5.2 years ago by michael.ante ★ 3.8k
1
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1
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755
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Answer: A: Finding smallest sequence which distinguish any DNA sample
5.2 years ago by michael.ante ★ 3.8k
2
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0
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12k
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Answer: A: The Longest Chromosome > Sizeof(Int32)
5.3 years ago by michael.ante ★ 3.8k
0
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1
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2.2k
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Answer: A: RNA-seq alignment against globin genes (HBA1, HBA1, and HBB)
5.3 years ago by michael.ante ★ 3.8k
0
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1
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4.8k
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Answer: A: Overrepresented stretches of Gs in NovaSeq library
5.3 years ago by michael.ante ★ 3.8k
1
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0
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3.0k
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Answer: A: Infer experiment - Failed to determine strandin paired end stranded RNA-seq
5.4 years ago by michael.ante ★ 3.8k
2
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1
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1.3k
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Answer: C: To find the genes encoding for Transcription factor in a given list
5.4 years ago by michael.ante ★ 3.8k
1
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1
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3.1k
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Answer: C: umi_tools extract error: IndexError: string index out of range
5.4 years ago by michael.ante ★ 3.8k
2
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2
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4.9k
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Answer: A: estimating read length and SD for Kallisto (single-end QuantSeq reads)
5.4 years ago by michael.ante ★ 3.8k
0
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0
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1.9k
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Answer: A: How to generate custom fasta and gtf files for RNA spike-ins
5.5 years ago by michael.ante ★ 3.8k
1
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1
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3.4k
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Answer: A: how to extract counts from bam/merge-bam without gtf
5.5 years ago by michael.ante ★ 3.8k
2
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0
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1.4k
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Answer: A: Extract sequence ID from Fasta for a given sequence
5.5 years ago by michael.ante ★ 3.8k
0
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0
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3.0k
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Answer: A: Aligning reads to genome together with transcriptome
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.8k
2
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1
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7.8k
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Answer: A: RPKM to FPKM conversion
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.8k
2
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0
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2.6k
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Answer: A: Good mean coverage but big std in coverage
5.6 years ago by michael.ante ★ 3.8k
1
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0
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5.6k
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Answer: A: Post Your Prefered Bioinformatics Short Code
updated 5.7 years ago by 43k • written 9.0 years ago by ★ 3.8k
3
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1
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1.5k
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Answer: A: Extracting the sequence of isoforms from RNA-seq data
5.7 years ago by michael.ante ★ 3.8k
2
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1
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3.7k
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Answer: A: Counting reads aligned to forward or reverse strand
5.7 years ago by michael.ante ★ 3.8k
0
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0
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3.4k
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Answer: A: comparing two files and adding columns of one file to another file if a fields i
5.8 years ago by michael.ante ★ 3.8k
1
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0
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3.7k
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Answer: A: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for w
5.8 years ago by michael.ante ★ 3.8k
1
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1
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2.0k
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Answer: A: RNA-seq : Quantification problem after mapped with BBMap
5.8 years ago by michael.ante ★ 3.8k
0
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0
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1.6k
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Answer: A: Create an assembly with a ribosomic chromosome
5.8 years ago by michael.ante ★ 3.8k
1
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1
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2.1k
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Answer: A: featureCounts problem annotation
5.8 years ago by michael.ante ★ 3.8k
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