Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
4.9k
views
Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
2.1k
views
Comment: Comment: Limma for batch effect correction
14 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
4.9k
views
Comment: Comment: Get TPM from RNA counts and gene length?
15 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
4.9k
views
Comment: Comment: Get TPM from RNA counts and gene length?
15 months ago by Gordon Smyth ★ 7.2k
4
votes
1
reply
4.9k
views
Answer: Answer: Get TPM from RNA counts and gene length?
15 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
5.6k
views
Comment: Comment: Limma package, how to correct by age and sex?
15 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
609
views
Answer: Answer: How to decide the best threshold for filtering probes in limma
15 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
586
views
Answer: Answer: How should I interpret FB_Plot in microarray analysis?
15 months ago by Gordon Smyth ★ 7.2k
3
votes
0
replies
1.1k
views
Answer: Answer: How should I deduce the variable from its variance and expectation in the `voom`
15 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
2.1k
views
Answer: Answer: Limma for batch effect correction
15 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
684
views
Answer: Answer: interpreting voom mean variance plots with large BCV and faint kink
15 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
725
views
Answer: Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
15 months ago by Gordon Smyth ★ 7.2k
6
votes
0
replies
2.2k
views
Answer: Answer: Hugely different results between edgeR and DESeq2
16 months ago by Gordon Smyth ★ 7.2k
2
votes
0
replies
1.1k
views
Answer: Answer: Processed RNA seq data publicly available
16 months ago by Gordon Smyth ★ 7.2k
3
votes
0
replies
1.7k
views
Answer: Answer: R is assigning unique identifier to the same column names when reading in as a d
16 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
1.8k
views
Answer: Answer: R programmin RNA seq
16 months ago by Gordon Smyth ★ 7.2k
3
votes
0
replies
1.9k
views
Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
16 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
624
views
Comment: Comment: GSA type of input data
16 months ago by Gordon Smyth ★ 7.2k
1
vote
2
replies
1.9k
views
Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
17 months ago by Gordon Smyth ★ 7.2k
4
votes
1
reply
1.9k
views
Answer: Answer: How to make contrasts to find genes DE in one experimental group but NOT in othe
17 months ago by Gordon Smyth ★ 7.2k
2
votes
0
replies
1.1k
views
Answer: Answer: Strange results from limma output
17 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
1.2k
views
Comment: Comment: Accounting for differential abundance in differential expression in scRNAseq
17 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
1.2k
views
Answer: Answer: Accounting for differential abundance in differential expression in scRNAseq
17 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.4k
views
Comment: Comment: How to remove duplicate rows by averaging their values having 1 million rows X 1
17 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
1.4k
views
Answer: Answer: How to remove duplicate rows by averaging their values having 1 million rows X 1
17 months ago by Gordon Smyth ★ 7.2k
5
votes
1
reply
2.5k
views
Answer: Answer: Different featureCounts data using GTF annotation file from two different source
17 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
486
views
Answer: Answer: microarray differential expression analyses
18 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
2.5k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
18 months ago by Gordon Smyth ★ 7.2k
2
votes
1
reply
2.5k
views
Answer: Answer: Error input data must be numeric in R, how to solve it?
18 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
1.6k
views
Comment: Comment: Filtering bad quality probes in illumina microarray data
18 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
1.6k
views
Comment: Comment: Filtering bad quality probes in illumina microarray data
18 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
1.6k
views
Answer: Answer: Filtering bad quality probes in illumina microarray data
18 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
970
views
Answer: Answer: is normalize RNA seq raw counts used correctly?
18 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
1.4k
views
Comment: Comment: Question about edgeR GLM funcionality
19 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.2k
views
Answer: Answer: Can I run EdgeR or DESeq2 on bimodal data caused by batch effect?
19 months ago by Gordon Smyth ★ 7.2k
2
votes
1
reply
1.4k
views
Answer: Answer: Question about edgeR GLM funcionality
19 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
521
views
Answer: Answer: EdgeR: apply minimum cpm threshold only to certain samples
19 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
1.2k
views
Comment: Comment: How to apply two tailed paired t-test in limma for DEGs selection?
19 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.3k
views
Answer: Answer: How to perform paired t-test in R for obtaining p-value of each gene?
19 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
1.2k
views
Answer: Answer: How to apply two tailed paired t-test in limma for DEGs selection?
19 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.3k
views
Comment: Comment: A check over my code using Limma DE, starting from normalized data
19 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
998
views
Answer: Answer: HELP- analysis RNa-seq from GEO
19 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
940
views
Comment: Comment: Reads mapping to pseudogenes using RSubread
20 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
738
views
Answer: Answer: Microarray DEG analysis visualisation
20 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
940
views
Answer: Answer: Reads mapping to pseudogenes using RSubread
20 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.5k
views
Comment: Comment: EDAseq, edgeR libraries cannot be installed in M2 mac
20 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
1.1k
views
Answer: Answer: Create the design matrix for limma differential expression analysis.
20 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
1.5k
views
Answer: Answer: EDAseq, edgeR libraries cannot be installed in M2 mac
20 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
1.5k
views
Comment: Comment: Same results in Limma Toptable as in DESEQ2 results
20 months ago by Gordon Smyth ★ 7.2k
4
votes
1
reply
1.5k
views
Answer: Answer: Same results in Limma Toptable as in DESEQ2 results
20 months ago by Gordon Smyth ★ 7.2k
507 results • Page 3 of 11
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6