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2
votes
0
replies
1.6k
views
Answer:
Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
4 months ago by
Gordon Smyth
★ 7.1k
0
votes
0
replies
525
views
Comment:
Comment: featureCounts error???
5 months ago by
Gordon Smyth
★ 7.1k
3
votes
1
reply
690
views
Answer:
Answer: Microarray data analysis with and without contrast
6 months ago by
Gordon Smyth
★ 7.1k
2
votes
0
replies
6.7k
views
Comment:
Comment: Illumina HumanHT-12 V4.0 expression beadchip
6 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
6.7k
views
Answer:
Answer: Illumina HumanHT-12 V4.0 expression beadchip
6 months ago by
Gordon Smyth
★ 7.1k
0
votes
1
reply
1.5k
views
Job:
Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
Australia
machine-learning
6 months ago by
Gordon Smyth
★ 7.1k
0
votes
0
replies
1.5k
views
Answer:
Answer: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
6 months ago by
Gordon Smyth
★ 7.1k
0
votes
1
reply
800
views
Comment:
Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
7 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
800
views
Answer:
Answer: Use limma for correlation analysis of RNA-seqdata and continous trait
7 months ago by
Gordon Smyth
★ 7.1k
2
votes
0
replies
2.1k
views
Answer:
Answer: Extracting Residuals from Differential Expression Model
8 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
610
views
Answer:
Answer: DGEList error in EdgeR - Warning: Error in $: $ operator is invalid for atomic v
9 months ago by
Gordon Smyth
★ 7.1k
0
votes
2
replies
1.1k
views
Answer:
Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
9 months ago by
Gordon Smyth
★ 7.1k
1
vote
0
replies
1.3k
views
Answer:
Answer: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
10 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
1.7k
views
Comment:
Comment: bar chart to show a p value of 0
10 months ago by
Gordon Smyth
★ 7.1k
1
vote
2
replies
1.7k
views
Comment:
Comment: bar chart to show a p value of 0
10 months ago by
Gordon Smyth
★ 7.1k
0
votes
1
reply
3.3k
views
Comment:
Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
1.7k
views
Answer:
Answer: bar chart to show a p value of 0
10 months ago by
Gordon Smyth
★ 7.1k
0
votes
1
reply
3.3k
views
Comment:
Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
2.4k
views
Answer:
Answer: How do I correctly format my limma/eBayes code?
10 months ago by
Gordon Smyth
★ 7.1k
0
votes
0
replies
1.4k
views
Answer:
Answer: How do I run DE for TPM values (not CPM)?
10 months ago by
Gordon Smyth
★ 7.1k
0
votes
1
reply
2.4k
views
Comment:
Comment: How do I correctly format my limma/eBayes code?
10 months ago by
Gordon Smyth
★ 7.1k
0
votes
2
replies
2.7k
views
Comment:
Comment: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.1k
0
votes
1
reply
2.7k
views
Comment:
Comment: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
2.7k
views
Answer:
Answer: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
2.7k
views
Comment:
Comment: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.1k
3
votes
1
reply
4.5k
views
Comment:
Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
11 months ago by
Gordon Smyth
★ 7.1k
2
votes
0
replies
816
views
Answer:
Answer: coef /makeContrasts very different results
11 months ago by
Gordon Smyth
★ 7.1k
0
votes
0
replies
2.2k
views
Comment:
Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
2.2k
views
Comment:
Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
1.0k
views
Comment:
Comment: Having problem on doing edgeR anlysis- cant create the DGE list through readbism
12 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
1.0k
views
Answer:
Answer: Having problem on doing edgeR anlysis- cant create the DGE list through readbism
12 months ago by
Gordon Smyth
★ 7.1k
5
votes
1
reply
1.4k
views
Answer:
Answer: LIMMA: where to find the ANOVA?
12 months ago by
Gordon Smyth
★ 7.1k
1
vote
0
replies
3.7k
views
Comment:
Comment: edgeR, Pseudobulk scRNA-seq
12 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
3.7k
views
Answer:
Answer: edgeR, Pseudobulk scRNA-seq
12 months ago by
Gordon Smyth
★ 7.1k
0
votes
1
reply
609
views
Answer:
Answer: Is it possible to use limma to simultaneously analyze RNA-seq and gene expressio
12 months ago by
Gordon Smyth
★ 7.1k
8
votes
1
reply
4.5k
views
Answer:
Answer: What are the advantages of using the T2T as a reference vs GRCh38 today?
12 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
2.1k
views
Comment:
Comment: Limma: is it necessary to log-transform the data?
12 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
2.1k
views
Comment:
Comment: Limma: is it necessary to log-transform the data?
13 months ago by
Gordon Smyth
★ 7.1k
4
votes
1
reply
2.1k
views
Answer:
Answer: Limma: is it necessary to log-transform the data?
12 months ago by
Gordon Smyth
★ 7.1k
0
votes
0
replies
571
views
Answer:
Answer: "align" in rsubread only reading 1 out of 6 of my input files
13 months ago by
Gordon Smyth
★ 7.1k
4
votes
0
replies
1.1k
views
Answer:
Answer: RNA-seq analysis without replicates
13 months ago by
Gordon Smyth
★ 7.1k
7
votes
1
reply
976
views
Answer:
Answer: How to "guess" the transformation based on already-transformed, "normalized coun
13 months ago by
Gordon Smyth
★ 7.1k
3
votes
0
replies
629
views
Answer:
Answer: How to Merge RNA Replicates
13 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
796
views
Answer:
Answer: suprisingly high logFC using limma
13 months ago by
Gordon Smyth
★ 7.1k
3
votes
1
reply
1.4k
views
Answer:
Answer: extract gene coordinates and TSS from gene list
13 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
1.5k
views
Answer:
Answer: How to remove unknown batch-batch effects from GEO datasets
13 months ago by
Gordon Smyth
★ 7.1k
2
votes
1
reply
4.6k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
14 months ago by
Gordon Smyth
★ 7.1k
0
votes
0
replies
4.6k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
14 months ago by
Gordon Smyth
★ 7.1k
0
votes
0
replies
2.1k
views
Comment:
Comment: Limma for batch effect correction
14 months ago by
Gordon Smyth
★ 7.1k
1
vote
1
reply
4.6k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
14 months ago by
Gordon Smyth
★ 7.1k
504 results • Page
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