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Answer:
A: Loop tophat to align multiple RNA-seq files
8.0 years ago by
TriS
★ 4.7k
1
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0
replies
6.0k
views
Answer:
A: GSEA with TCGA data
8.0 years ago by
TriS
★ 4.7k
2
votes
0
replies
4.2k
views
Answer:
A: Somatic and Germline variant calling in ion torrent
8.0 years ago by
TriS
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7
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2
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9.8k
views
Answer:
A: Good Habit for Bioinformatics Analyst or Scientist
8.0 years ago by
TriS
★ 4.7k
1
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1
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2.1k
views
Answer:
A: TN and TP samples in TCGA
8.1 years ago by
TriS
★ 4.7k
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0
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2.1k
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Answer:
A: [TCGA] Statistical analysis of somatic variant calling
8.1 years ago by
TriS
★ 4.7k
4
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0
replies
2.6k
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Answer:
A: I'm in a Masters of Bioinformatics Program and wanted to ask everyone for advice
8.2 years ago by
TriS
★ 4.7k
0
votes
0
replies
2.5k
views
Answer:
Answer: removing duplicate SNPs (same position) with lowest call rate
updated 22 months ago by
Ram
43k • written 8.3 years ago by
TriS
★ 4.7k
0
votes
0
replies
2.1k
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Answer:
A: TCGA/Cancer Tissue RNAseq
8.4 years ago by
TriS
★ 4.7k
1
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0
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2.6k
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Answer:
A: Align FastQ file to reference mouse mm9 genome
8.5 years ago by
TriS
★ 4.7k
1
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1
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2.1k
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Answer:
Answer: Protocol for Chip-seq analysis for beginners
updated 20 months ago by
Ram
43k • written 8.6 years ago by
TriS
★ 4.7k
0
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0
replies
3.5k
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Answer:
Answer: Finding the TFs that regulate a set of genes
updated 20 months ago by
Ram
43k • written 8.6 years ago by
TriS
★ 4.7k
1
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1
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4.5k
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Answer:
A: filtering pileup file with samtools for SomaticSniper
8.6 years ago by
TriS
★ 4.7k
10
votes
3
replies
28k
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Answer:
Answer: What is the difference between narrow peak, Broad peak and a gapped peak of a c
updated 20 months ago by
Ram
43k • written 8.6 years ago by
TriS
★ 4.7k
1
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1
reply
3.5k
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Answer:
A: How to compare the correlation between the RNAseq data from human and mouse tumo
8.6 years ago by
TriS
★ 4.7k
1
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1
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3.0k
views
Answer:
A: Why FPKM value of gene expression profiles are very close to zero?
8.6 years ago by
TriS
★ 4.7k
2
votes
0
replies
3.6k
views
Answer:
Answer: Correlation between gene expression and Occupancy data.
updated 20 months ago by
Ram
43k • written 8.7 years ago by
TriS
★ 4.7k
1
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0
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8.7k
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Answer:
Answer: New features and bug fixes for Biostar to work on during Google Summer of Code
updated 20 months ago by
Ram
43k • written 8.7 years ago by
TriS
★ 4.7k
0
votes
1
reply
2.9k
views
Answer:
Answer: CNV data for Urothelial Bladder carcinoma
updated 20 months ago by
Ram
43k • written 8.7 years ago by
TriS
★ 4.7k
3
votes
1
reply
2.9k
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Answer:
Answer: H3K4me3 occupancy visualisation
updated 20 months ago by
Ram
43k • written 8.7 years ago by
TriS
★ 4.7k
0
votes
0
replies
3.0k
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Answer:
Answer: Is it better to find distance from peaks to genes or distance from summits of pe
updated 19 months ago by
Ram
43k • written 8.8 years ago by
TriS
★ 4.7k
0
votes
0
replies
2.2k
views
Answer:
Answer: identification of single pathway from microarray data
updated 19 months ago by
Ram
43k • written 8.8 years ago by
TriS
★ 4.7k
2
votes
1
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4.6k
views
Answer:
Answer: Transcriptional repressors and transcriptional activators
updated 19 months ago by
Ram
43k • written 8.8 years ago by
TriS
★ 4.7k
1
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0
replies
2.9k
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Answer:
Answer: Is there a tool to retrive transcription factors (Tfs) which have the common bin
updated 19 months ago by
Ram
43k • written 8.8 years ago by
TriS
★ 4.7k
0
votes
0
replies
13k
views
Answer:
Answer: Calculate FPKM value from bam files
updated 19 months ago by
Ram
43k • written 8.8 years ago by
TriS
★ 4.7k
1
vote
1
reply
5.2k
views
Answer:
Answer: What package to use in bioconductor to draw heatmap like this
updated 16 months ago by
Ram
43k • written 9.0 years ago by
TriS
★ 4.7k
6
votes
1
reply
34k
views
Answer:
A: Drawing venn diagram in R
9.1 years ago by
TriS
★ 4.7k
1
vote
2
replies
2.5k
views
Answer:
Answer: R programming question: insert alternately
updated 22 months ago by
Ram
43k • written 9.1 years ago by
TriS
★ 4.7k
2
votes
1
reply
5.4k
views
Answer:
Answer: TCGA RNA-Seq, Expression levels in comparison with normal and connection with CN
updated 23 months ago by
Ram
43k • written 9.1 years ago by
TriS
★ 4.7k
0
votes
1
reply
3.5k
views
Answer:
A: Database to map gene ID to the chromosome where it is located?
9.1 years ago by
TriS
★ 4.7k
2
votes
0
replies
8.3k
views
Answer:
Answer: Gene Expression Correlation
updated 23 months ago by
Ram
43k • written 9.1 years ago by
TriS
★ 4.7k
1
vote
1
reply
2.7k
views
Answer:
Answer: Random gene selection based on gene metrics such as length, GC content, replicat
updated 23 months ago by
Ram
43k • written 9.1 years ago by
TriS
★ 4.7k
6
votes
1
reply
2.6k
views
Answer:
A: How to check whether two genomic regions contact in 3D?
9.2 years ago by
TriS
★ 4.7k
0
votes
1
reply
2.0k
views
Answer:
Answer: Counting number of TE in a file
updated 24 months ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
1
vote
1
reply
12k
views
Answer:
A: how can i convert gene symbol to affymetrix IDs ?
9.2 years ago by
TriS
★ 4.7k
1
vote
0
replies
12k
views
Answer:
Answer: How to switch from bench research to computational biology?
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
0
votes
1
reply
3.0k
views
Answer:
Answer: Relationship between Affymetric probe id, ensembl id and entrez id and gene name
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
24
votes
3
replies
35k
views
Answer:
Answer: question about GSEA
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
2
votes
1
reply
4.8k
views
Answer:
Answer: download fastq file from geo/sra for negative control
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
1
vote
0
replies
11k
views
Answer:
Answer: How To Search Disease Association For A List Of Genes?
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
1
vote
1
reply
7.8k
views
Answer:
Answer: transcription factor binding site prediction software/server
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
TriS
★ 4.7k
1
vote
0
replies
9.9k
views
Answer:
Answer: ALL RNA-seq publicly available data
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
3
votes
0
replies
3.7k
views
Answer:
Answer: Correlated/Coexpressed genes , given the name of a gene.
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
0
votes
0
replies
3.7k
views
Answer:
Answer: Finding differential enrichment of known motif in gene set
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
1
vote
0
replies
2.1k
views
Answer:
Answer: Alignment of genomic resequenced data to reference genome
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
1
vote
1
reply
2.3k
views
Answer:
A: Gene Ontology analysis from and heterogeneous list of genes names
9.3 years ago by
TriS
★ 4.7k
0
votes
1
reply
12k
views
Answer:
Answer: Why am I unable to load my data from a tab separated file into R?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
3
votes
1
reply
3.1k
views
Answer:
Answer: How to split gene names in my list?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
0
votes
0
replies
2.2k
views
Answer:
Answer: error using bedtools closestbed
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
2
votes
3
replies
4.8k
views
Answer:
Answer: Determining gene expression with 2 biological replicates and RPKM data only
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
TriS
★ 4.7k
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