Song Qiang, Ph.D.

Molecular and Computational Biology

University of Southern California

Software

• MethPipe: The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data (BS-seq, WGBS and RRBS). http://smithlab.usc.edu/methpipe/
• MethBase: MethBase is a central reference methylome database created from public BS-seq datasets. http://smithlab.usc.edu/methbase/
• RSEG: The RSEG software package is aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers. http://smithlab.usc.edu/histone/rseg/