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russianconcussion
russianconcussion
Reputation:
30
Joined:
12.9 years ago
Last seen:
6.0 years ago
Location:
United States

PhD candidate in microbiology at Oregon State University.  Wrangling metagenomes, mostly with other people's code (isn't that the definition of hell: other people's code? haha!  Anyhow, thank you if you help me with my own).

Latest posts by user
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2 replies
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Comment: C: Manage expected successful job exit but no output file in Snakemake
written by russianconcussion • russianconcussion
0 votes
4 replies
3.6K views
Manage expected successful job exit but no output file in Snakemake
snakemake python shell
updated by Biostar Biostar • written by russianconcussion • russianconcussion
0 votes
0 replies
0 views
Comment: C: "out" parameter for _Fasttree module in Bio.Phylo.Applications from Biopython 1.
written by russianconcussion • russianconcussion
0 votes
1 reply
0 views
Comment: C: "out" parameter for _Fasttree module in Bio.Phylo.Applications from Biopython 1.
written by russianconcussion • russianconcussion
0 votes
1 reply
0 views
Comment: C: "out" parameter for _Fasttree module in Bio.Phylo.Applications from Biopython 1.
written by russianconcussion • russianconcussion
2 votes
7 replies
3.4K views
"out" parameter for _Fasttree module in Bio.Phylo.Applications from Biopython 1.68 doesn't work
biopython fasttree
updated by Biostar Biostar • written by russianconcussion • russianconcussion
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0 replies
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Comment: C: How to make a custom blast db with taxon IDs from a taxid_map file
written by russianconcussion • russianconcussion
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0 replies
0 views
Comment: C: Need help interpreting gdb backtrace from a SAMtools segmentation fault (or help
written by russianconcussion • russianconcussion
0 votes
0 replies
0 views
Comment: C: Need help interpreting gdb backtrace from a SAMtools segmentation default (or he
written by russianconcussion • russianconcussion
0 votes
3 replies
3.2K views
Need help interpreting gdb backtrace from a SAMtools segmentation fault (or help editing SAM/BAM files!)
bam samtools pysam
written by russianconcussion • russianconcussion
0 votes
1 reply
6.4K views
How to write FULL genbank files with Biopython SeqIO module?
genbank biopython
updated by Ram Ram • written by russianconcussion • russianconcussion
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0 replies
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Comment: C: Compare multiple samples on KEGG
updated by Ram Ram • written by russianconcussion • russianconcussion
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0 replies
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Answer: Answer: Tool to separate two genotypes from mapped Illumina reads?
updated by Ram Ram • written by russianconcussion • russianconcussion
0 votes
1 reply
4.6K views
Convert blastn (from blast+) output to old blastall -m 6 (Flat query-anchored, no identities and blunt ends) format
blastall blastn
updated by Ram Ram • written by russianconcussion • russianconcussion
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0 replies
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Comment: Comment: Can Bio.Blast.NCBIXML somehow parse the stdout from NcbipsiblastCommandline so t
updated by Ram Ram • written by russianconcussion • russianconcussion
0 votes
3 replies
6.5K views
Can Bio.Blast.NCBIXML somehow parse the stdout from NcbipsiblastCommandline so that no .xml file is created?
ncbixml blast biopython
updated by Ram Ram • written by russianconcussion • russianconcussion
1 vote
0 replies
0 views
Comment: C: Selecting Random Pairs From Fastq?
updated by Ram Ram • written by russianconcussion • russianconcussion
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