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donfreed
donfreed
Reputation:
1,600
Joined:
13.3 years ago
Last seen:
1 month ago
Location:
San Francisco

Bioinformatic Scientist.

Latest posts by user
1 vote
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Answer: A: gVCF files from 1000 Genomes samples
written by donfreed donfreed
1 vote
1 reply
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Answer: A: Error-prone human genomic sequence data from Illumina sequencing platform
written by donfreed donfreed
0 votes
0 replies
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Comment: C: Modifying fasta file based on vcf information
written by donfreed donfreed
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Comment: C: how to distinguish mosaicism out of germline de novo mutations
written by donfreed donfreed
3 votes
1 reply
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Answer: A: how to distinguish mosaicism out of germline de novo mutations
written by donfreed donfreed
1 vote
0 replies
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Answer: A: Mutect 2 on WGS data takes too long to run
written by donfreed donfreed
1 vote
1 reply
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Answer: A: How to find variants that are common in one population but rare in others (popul
written by donfreed donfreed
1 vote
1 reply
1 view
Comment: C: I want to store a docker image reproducing a paper. Is there a host for docker i
written by donfreed donfreed
2 votes
1 reply
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Comment: C: gVCF files from 1000 Genomes samples
written by donfreed donfreed
8 votes
4 replies
5.3K views
gVCF files from 1000 Genomes samples
gvcf 1000 genomes
written by donfreed donfreed
0 votes
0 replies
1 view
Comment: C: samtools vcf output disagree with mpileup in DP
written by donfreed donfreed
2 votes
0 replies
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Answer: Answer: A command line option for region in GenotypeGVCFs?
updated by Ram Ram • written by donfreed donfreed
1 vote
0 replies
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Answer: A: Algorithm to find PL indicies containing a specific allele
written by donfreed donfreed
0 votes
1 reply
2.2K views
Algorithm to find PL indicies containing a specific allele
vcf sequencing algorithm
updated by Ram Ram • written by donfreed donfreed
0 votes
1 reply
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Answer: A: CNVnator installation error
updated by Ram Ram • written by donfreed donfreed
0 votes
0 replies
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Comment: C: Can germline vs somatic variants be distinguished by phasing when no control is
updated by Ram Ram • written by donfreed donfreed
3 votes
2 replies
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Answer: A: Can germline vs somatic variants be distinguished by phasing when no control is
updated by Ram Ram • written by donfreed donfreed
0 votes
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Comment: C: Calculation of PFBs for CNV analysis from 1000 Genomes data
written by donfreed donfreed
1 vote
1 reply
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Comment: Comment: Tool for random access to indexed BAM files in S3?
updated by Ram Ram • written by donfreed donfreed
2 votes
2 replies
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Comment: Comment: Tool for random access to indexed BAM files in S3?
updated by Ram Ram • written by donfreed donfreed
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