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cg1440
cg1440
Reputation:
60
Joined:
5.9 years ago
Last seen:
4.4 years ago
Location:
Lebanon
Latest posts by user
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Comment: Comment: Analysing Problem Seen In MEGA X
written by cg1440 • cg1440
3 votes
3 replies
6.4K views
samtools/bcftools mpileup -B option: to use it or not in order to reduce the occurence of false SNPs discovery?
covid-19 mpileup bcftools snp samtools
written by cg1440 • cg1440
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Comment: Comment: Excluding variants with a "LowQual" filter in bcftools consensus
written by cg1440 • cg1440
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0 replies
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Comment: Comment: Excluding variants with a "LowQual" filter in bcftools consensus
written by cg1440 • cg1440
0 votes
4 replies
3.9K views
Excluding variants with a "LowQual" filter in bcftools consensus
snp bcftools covid-19 ngs
written by cg1440 • cg1440
0 votes
1 reply
0 views
Comment: C: Effect of removing secondary/supplementary alignments from BAM file?
written by cg1440 • cg1440
0 votes
3 replies
3.5K views
Effect of removing secondary/supplementary alignments from BAM file?
ngs covid-19 snp
written by cg1440 • cg1440
0 votes
1 reply
0 views
Comment: C: FASTQC - Good "Per Base Sequence Quality" but Bad "Per Tile Sequence Quality"?
written by cg1440 • cg1440
0 votes
3 replies
3.9K views
FASTQC - Good "Per Base Sequence Quality" but Bad "Per Tile Sequence Quality"?
fastqc covid-19 ngs
written by cg1440 • cg1440
0 votes
1 reply
0 views
Comment: C: Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in
written by cg1440 • cg1440
0 votes
3 replies
3.0K views
Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in fastqc?
fastqc ngs
updated by Devon Ryan Devon Ryan • written by cg1440 • cg1440
0 votes
1 reply
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Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
written by cg1440 • cg1440
0 votes
1 reply
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Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
written by cg1440 • cg1440
0 votes
1 reply
0 views
Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
written by cg1440 • cg1440
0 votes
0 replies
0 views
Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
written by cg1440 • cg1440
0 votes
1 reply
0 views
Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
written by cg1440 • cg1440
1 vote
13 replies
23K views
Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
trimmomatic fastqc ngs
updated by Carlo Yague Carlo Yague • written by cg1440 • cg1440
0 votes
0 replies
0 views
Comment: C: Does the order of the samples matter in the design matrix? (paired samples - lim
written by cg1440 • cg1440
0 votes
2 replies
1.2K views
Does the order of the samples matter in the design matrix? (paired samples - limma package)
limma linear model microarray
written by cg1440 • cg1440
0 votes
0 replies
1.2K views
Why does oligo::getProbeInfo() give a lower number of probes than the actual number of probes on Affymetrix Human Gene 1.0 ST Array ?
r affymetrix oligo
written by cg1440 • cg1440
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