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aaghodsinia
aaghodsinia
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Can I determine if RNA-SEQ data is forward stranded, reverse stranded, or unstranded from FASTQ file?
rna-seq fastq forward reverse unstranded
updated by Antonio R. Franco Antonio R. Franco • written by aaghodsinia • aaghodsinia
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Can gff compare classification J transcripts (multi-exon with at least one junction match) be considered as novel transcripts?
gff compare classification rna-seq novel trancript
written by aaghodsinia • aaghodsinia
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Stringtie Merge file difference MSTRG Question
rna-seq stringtie merge
written by aaghodsinia • aaghodsinia
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1 reply
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Comment: C: Should i use Stringtie gene count or transcript count as input for DESEQ2? What
written by aaghodsinia • aaghodsinia
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Comment: C: Should i use Stringtie gene count or transcript count as input for DESEQ2? What
written by aaghodsinia • aaghodsinia
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4 replies
3.4K views
Should i use Stringtie gene count or transcript count as input for DESEQ2? What is difference between gene count and transcript count?
rna-seq stringtie deseq2 gene transcript
updated by ATpoint ATpoint • written by aaghodsinia • aaghodsinia
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