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David Fredman
David Fredman
Reputation:
1,110
Joined:
14.1 years ago
Last seen:
5.4 years ago
Location:
University of Bergen, Norway
Google Scholar:
L4kdNJsAAAAJ
Twitter:
davfre

Computational biologist, programmer & data analyst. I study genome/transcriptome/regulatory function and evolution

Latest posts by user
3 votes
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Answer: Answer: how to get actual gene sequence after cufflinks
updated by Ram Ram • written by David Fredman David Fredman
0 votes
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Comment: Comment: Counting sense reads in bacterial paired-end RNA-seq data
updated by Ram Ram • written by David Fredman David Fredman
1 vote
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Answer: A: rnahybrid "Error in nextSQ. Aborting"
written by David Fredman David Fredman
0 votes
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Answer: Answer: R Equivalent of Cross-Gene Error Model (CGEM) (Rocke and Durbin 2001).
updated by Ram Ram • written by David Fredman David Fredman
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Comment: Comment: Rank Genes By FPKM for only One Sample
updated by Ram Ram • written by David Fredman David Fredman
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Comment: Comment: gft to fasta conversion
updated by Ram Ram • written by David Fredman David Fredman
2 votes
1 reply
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Comment: Comment: gft to fasta conversion
updated by Ram Ram • written by David Fredman David Fredman
9 votes
1 reply
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Answer: Answer: gft to fasta conversion
updated by Ram Ram • written by David Fredman David Fredman
2 votes
0 replies
3.4K views
Job: (Closed) Researcher in informatics - Genomics and Computational Biology, Bergen, Norway
next-gen-sequencing rna-seq
updated by Ram Ram • written by David Fredman David Fredman
1 vote
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Comment: Comment: Looking for a tool to do GO enrichment analysis with BLAST2GO output(s)
updated by Ram Ram • written by David Fredman David Fredman
0 votes
1 reply
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Comment: Comment: edgeR / deSeq parallel usage
updated by Ram Ram • written by David Fredman David Fredman
0 votes
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Answer: A: Grouping columns in a BED like file
written by David Fredman David Fredman
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1 reply
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Comment: C: Grouping columns in a BED like file
written by David Fredman David Fredman
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Comment: C: GTF files for cufflinks
written by David Fredman David Fredman
2 votes
2 replies
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Answer: Answer: GTF files for cufflinks
updated by Ram Ram • written by David Fredman David Fredman
0 votes
1 reply
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Comment: Comment: How to get the expression level of specific gene without annotation in RNA-Seq?
updated by Ram Ram • written by David Fredman David Fredman
2 votes
2 replies
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Answer: Answer: How to get the expression level of specific gene without annotation in RNA-Seq?
updated by Ram Ram • written by David Fredman David Fredman
1 vote
1 reply
1 view
Comment: Comment: How Can Cufflinks Assemble De Novo Transcripts With Many Exons When They Have 0
updated by Ram Ram • written by David Fredman David Fredman
0 votes
0 replies
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Comment: C: Annotating sequences after de-novo Trinity assembly and RSEM analysis...there mu
written by David Fredman David Fredman
1 vote
0 replies
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Answer: Answer: How to prepare histogram for uniq reads count
updated by Ram Ram • written by David Fredman David Fredman
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