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Shaun Jackman
Shaun Jackman
Reputation:
420
Joined:
14.2 years ago
Last seen:
6.5 years ago
Location:
Vancouver, Canada
Google Scholar:
wFl3qXAAAAAJ
Twitter:
@sjackman

I live in Vancouver, Canada, where I’m a PhD student studying bioinformatics at the University of British Columbia with my supervisor, Inanc Birol. I work with the genome sequencing data of a variety of species, including human and the white spruce tree. I develop software that takes fragmented genome sequencing data and attempts to reassemble the original genome from which the short fragments were derived. My undergraduate degree is in computer engineering. I’m a programmer, an avid traveller, a singer, and an experimental amateur chef.

Latest posts by user
1 vote
1 reply
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Answer: A: GFF to TBL file conversion for annotation submission
written by Shaun Jackman Shaun Jackman
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0 replies
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Answer: A: "brew install brewsci/bio/abyss" doesn't work - no formula
written by Shaun Jackman Shaun Jackman
0 votes
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Comment: C: How To Pull Out Qual From Multi Line Fastq?
written by Shaun Jackman Shaun Jackman
4 votes
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Answer: A: Assembly with mate-pairs issue
written by Shaun Jackman Shaun Jackman
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Comment: C: Assembly with mate-pairs issue
written by Shaun Jackman Shaun Jackman
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Comment: C: How to sort a VCF file lexicographically by chromosome number?
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Comment: C: ABySS assembly runs forever
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
4 votes
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Answer: Answer: degenerate nucleotide in abyss assemblies?
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
2 votes
1 reply
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Answer: A: Boost compile error
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
2 votes
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Answer: A: Abyss genome assembly input
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Answer: A: Abyss stuck for past 48 days in generating adjency
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Comment: Comment: Abyss 1.5.2: MergePaths failed
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Comment: C: Scaffolding with Mate-Pairs Error
written by Shaun Jackman Shaun Jackman
2 votes
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Answer: A: Scaffolding with Mate-Pairs Error
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Answer: Answer: ABySS-Explorer cannot find my adj file
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Comment: Comment: Abyss Installation Error - KCONNECTOR
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
2 votes
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Answer: Answer: Abyss Installation Error - KCONNECTOR
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Comment: Comment: Abyss Installation Error - KCONNECTOR
updated by Ram Ram • written by Shaun Jackman Shaun Jackman
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Comment: C: Assembly with Abyss question
written by Shaun Jackman Shaun Jackman
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Comment: C: Error while abyss running on cluster
written by Shaun Jackman Shaun Jackman
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