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Jon17
Jon17
Reputation:
20
Joined:
9.9 years ago
Last seen:
7.0 years ago
Latest posts by user
1 vote
3 replies
1.9K views
Detecting GC Bias in Transcriptomes (RNA-seq)
rna-seq transcriptome
written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: C: rnaseqc.v2.3 - Doesn't detect exons in GTF
written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: C: rnaseqc.v2.3 - Doesn't detect exons in GTF
written by Jon17 • Jon17
0 votes
4 replies
2.9K views
rnaseqc.v2.3 - Doesn't detect exons in GTF
rna-seq rna-seq qc mit gencode
updated by Ram Ram • written by Jon17 • Jon17
0 votes
0 replies
0 views
Comment: C: Graphing GC Bias in Sequence Capture
written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: C: Graphing GC Bias in Sequence Capture
written by Jon17 • Jon17
0 votes
5 replies
2.5K views
Graphing GC Bias in Sequence Capture
sequencing gcbias bed picard
updated by Chao Tang • Chao Tang • written by Jon17 • Jon17
1 vote
0 replies
0 views
Comment: C: Compute mean depth coverage for exome data with paired end, overlapping, feature
written by Jon17 • Jon17
0 votes
0 replies
1.6K views
Depth of coverage of Bed file regions?
bedtools bed genome coverage
updated by h.mon h.mon • written by Jon17 • Jon17
0 votes
0 replies
1.6K views
Picard HsMetrics on Whole Genome (no bedfile) need "HS_Penalty_20X & HS_LIBRARY_SIZE"
picard gatk
updated by Biostar Biostar • written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: C: De-multiplexing Single Index BCL & Fastq reads?
written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: C: De-multiplexing Single Index BCL & Fastq reads?
written by Jon17 • Jon17
0 votes
6 replies
4.1K views
De-multiplexing Single Index BCL & Fastq reads?
bcl2fastq illumina demultiplex single-index
updated by h.mon h.mon • written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: A: Demultiplex fastq miseq reads
written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: C: Best Tools for analyzing Bisulfite sequencing bam files?
written by Jon17 • Jon17
0 votes
1 reply
0 views
Comment: C: Best Tools for analyzing Bisulfite sequencing bam files?
written by Jon17 • Jon17
0 votes
0 replies
0 views
Comment: C: Have variant call file, need to do snp counts (methylation counts)
written by Jon17 • Jon17
0 votes
2 replies
2.2K views
Have variant call file, need to do snp counts (methylation counts)
methyl-seq bisulfite-seq
updated by Biostar Biostar • written by Jon17 • Jon17
0 votes
4 replies
2.8K views
Best Tools for analyzing Bisulfite sequencing bam files?
bs-seq
updated by WouterDeCoster WouterDeCoster • written by Jon17 • Jon17
0 votes
1 reply
1 view
Comment: C: Full Size Bismark Test Dataset? Industry standard methods for Sequence capture
written by Jon17 • Jon17
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