This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Stew
Stew
Reputation:
1,430
Joined:
16.3 years ago
Last seen:
9.7 years ago
Location:
Cambridge

I am a computational biologist in Cambridge. I work mainly in R, perl and shell scripts. I work on chIP chip/Seq, motif finding, microarrays and functional analysis.

Latest posts by user
5 votes
1 reply
1 view
Answer: A: A Cytoscape Plugin For Grouping Nodes By 'Compartment' ?
written by Stew Stew
4 votes
1 reply
0 views
Answer: A: How To Find The Pathways In Which A Given Gene Or Protein Is Involved？
written by Stew Stew
1 vote
0 replies
0 views
Comment: C: How To Convert A Transfac Pssm Into Meme Format?
written by Stew Stew
4 votes
2 replies
0 views
Answer: A: How To Convert A Transfac Pssm Into Meme Format?
written by Stew Stew
0 votes
0 replies
0 views
Comment: C: How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
written by Stew Stew
0 votes
0 replies
0 views
Comment: C: How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
written by Stew Stew
20 votes
12 replies
22K views
How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
chip-seq coverage statistics bed
updated by bwd • bwd • written by Stew Stew
9 votes
0 replies
58 views
Answer: A: How To Avoid False Negative And False Positive When Searching For Tfbs?
written by Stew Stew
4 votes
0 replies
0 views
Answer: A: Any Tools To Identify Significantly Altered Pathways?
written by Stew Stew
0 votes
0 replies
0 views
Comment: C: What Parameters Do You Use With Findpeaks For Chip Seq Peak Calling?
written by Stew Stew
0 votes
0 replies
0 views
Comment: C: What Parameters Do You Use With Findpeaks For Chip Seq Peak Calling?
written by Stew Stew
3 votes
7 replies
6.8K views
What Parameters Do You Use With Findpeaks For Chip Seq Peak Calling?
chip-seq
updated by Biostar Biostar • written by Stew Stew
0 votes
0 replies
0 views
Comment: C: How To Extract Reads From Bam That Overlap With Specific Regions?
written by Stew Stew
18 votes
18 replies
36K views
How To Extract Reads From Bam That Overlap With Specific Regions?
next-gen sequencing bam bed coverage read
updated by Alex Reynolds Alex Reynolds • written by Stew Stew
0 votes
0 replies
0 views
Comment: C: How Can I Convert Bam/Sam To Wiggle
written by Stew Stew
4 votes
0 replies
0 views
Answer: A: Extract Line By Line In *.Bam Files
updated by Ram Ram • written by Stew Stew
19 votes
19 replies
57K views
How Can I Convert Bam/Sam To Wiggle
wiggle perl samtools
updated by Ram Ram • written by Stew Stew
1 vote
0 replies
0 views
Comment: C: How To Process Large Chipseq Data?
updated by Ram Ram • written by Stew Stew
4 votes
0 replies
0 views
Answer: A: Binding Site Matrices.
written by Stew Stew
0 votes
0 replies
0 views
Comment: C: Looking For A Simple Method For Calculating Pwms/Pssms
written by Stew Stew
Latest awards to user
TODO: Awards