Looking For Tools To Find Non-Coding Rnas In Bacterial Rna-Seq Data

Hi,

I'm looking for tools to semi-automate finding non-coding RNAs in bacterial RNA-seq data. I've been able to find these or these tools, but I'm still quite lost. I've also seen this Biostar post.

The few papers I could find don't follow a common method.

Can anyone recommend me the best approach?

Thanks, Bernardo

rnaseq rna-seq bacteria

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updated 3.9 years ago by Ram

• written 12.4 years ago by biotech

1 answer

Hi a nice software to do it is Rockhopper , allow work with different experimental condition http://cs.wellesley.edu/~btjaden/Rockhopper/ maybe you should complement with homology studied as RNA structure conservation and sequence homology.

• 1 views • link

updated 3.9 years ago by Ram

• written 10.9 years ago by gufernandez10 •

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