Different Analysis From Interproscan Report Different Go Id On Same Protein
Hi, I run interproscan on a set of proteins. However, the results are really confusing.
Here's an example:
NM07149_Contig56_3B_G940 PANTHER protein_match 3 458 . + . Name=PTHR11444:SF3;Target=NM07149_Contig56_3B_G 940 3 458;status=T;ID=match$4_3_458;Ontology_term="GO:0004056","GO:0042450";date=23-03-2014;Dbxref="InterPro:IPR009049","KEGG:00250+4.3.2.1","K EGG:00330+4.3.2.1","MetaCyc:PWY-4983","MetaCyc:PWY-4984","MetaCyc:PWY-5","MetaCyc:PWY-5154","UniPathway:UPA00068"
NM07149_Contig56_3B_G940 SUPERFAMILY protein_match 6 457 . + . Name=SSF48557;Target=NM07149_Contig56_3 B_G940 6 457;status=T;ID=match$5_6_457;Ontology_term="GO:0003824";date=23-03-2014;Dbxref="InterPro:IPR008948"
The sample region annotated by PANTHER report an Ontology_term of 0004056 and 0042450 while SUPERFAMILY report 0003824. How to know which is the correct one? Or any other meaning of the results?
Thanks!
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Xingyu Yang
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No one help me so I have to solve it myself. I notice in some results, one gene can have multiple coresponding GO ids.
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Xingyu Yang
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