Tool: I made an app that makes DNA files 40% smaller than CRAM , Spring
I've been working on this for over a year , but I am able to compress BAM , Fastq , VCF files by at least 40% of CRAM , Spring , Petagene , etc . You can do random access of any genome , lossless decoding and I wrote a command line app that gets or puts a file on the system in a short one line command
All files are stored on Google Cloud or AWS , and you can store a terabyte for free . Let me know if you have any questions
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Tool: Query different files in the big 3 clouds.
written by Andrew •
-
Tool: Drawing circular and linear mitochondrial genome diagrams
written by s.j.goodman •
-
Best Omic file compressor?
written by matthew.pace
-
Snakemake/Google-Life-Sciences aggregate funtion issue
written by Stephan •
-
bwa mem | samtools sort failing without any error messages
written by thisisluottamus •
-
RNA seq pipeline on the cloud
written by jmgoldstein7 •
-
Is Prokka giving me an inaccurate number of genes?
written by zuhaibzulfiqarahmed •
-
Tutorial: Analysis of dbGaP data on the cloud
written by Malachi Griffith
-
Parse Many/Multiple .Pdb Files Using Perl Script
written by hmarajkrishnan •
-
Is There An Explanation For This Tophat "Yt" Descriptor Discrepancy In My Sam Output?
written by Dan D
I am also able to give out more free storage ( 10 Terabytes ) for feedback if you use it
Is that in your cloud space or users use their own cloud space. Not clear from the documentation. If the data needs to stay in your space then that could be a non-starter for many institutions, unless they set up business agreements with your company.
Good question . It can be in your cloud space ( it can write to any cloud storage ) . Also adding the entire app on the AWS , GCP , Azure marketplace so the data never leaves a users private network when you run it within your account.
So the app is free(?) but there will be a charge based on the amount of the data that is processed?
That is correct . What do you think . Open to any feedback to make it better
Feels like the easier business model would be to license the actual software given many institutions still use/prefer on-prem storage.
Have you also seen https://www.genozip.com/.