Hello everyone,

I am working with the find_circ program for circRNA detection in honey bee transcriptomes. So far, I have successfully generated the following files:

• bam
• unmapped.bam
• unmapped.fastq
• anchors.sam
• anchors.fastq
• anchors.mapped.sam

The next step should be running the following command:

python "${OUTDIR}/find_circ.py" \
-G "${GENOME}" \
"${OUTDIR}/${SAMPLE}.anchors.mapped.q20.sam" \
> "${OUTDIR}/${SAMPLE}.findcirc.txt"

However, every time I run this command, the program never finishes running (without any error messages). The .findcirc.txt file remains at 0 bytes, and there is no CPU activity associated with the process.

Does anyone recognize this issue or know what might be causing it?

Thank you in advance!