Any method to extract k-mer seqs of a specific taxid from KrakenUniq/Kraken database?
I am a biologist, not a programmer. I am very interested in the correspondence between k-mers and taxids in the Kraken and KrakenUniq databases. Moreover, the logic of Kraken is more straightforward than that of Kraken2, which makes it easier for me to grasp. I hope to export all k-mer sequences corresponding to a specified strain, species, genus, or any taxid from the Kraken or KrakenUniq database into a FASTA file. Is there a script or other method to achieve this?
• 612 views
•
link
0 answers
No answers yet.
Log in to answer this question.
extract_kraken_reads.py is for extracting READS assigned to specific taxid by kraken and its database. What I need is to extract k-mer seqs from kraken's database, not from querys to kraken's run.