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TRRUST v2 down , how to get trrust_rawdata.[].tsv

Hi community,

Recently, I've been working with TRRUST2 to predict TF. However, in the past week, it seems to be down... I've been trying to access over here: https://www.grnpedia.org/trrust/v1/ and then going to V2, but the access is no longer available ,and I can't download the reference from there or by using:

library(OmnipathR)
trrust_interactions <- trrust_download()

I would like to retrieve this information from both mouse and human. Does anyone have any idea what is going on and if it is possible to download the trrust_rawdata.human.tsv and/or trrust_rawdata.mouse.tsv from somewhere else?

Thank you very much in advance!

trrust human mouse tf
• 1,807 views • link
updated by Arup Ghosh Arup Ghosh • written by Lila M Lila M

post has been updated

• 0 views • link
written by Lila M Lila M

Have you tried to write to the email address shown on the V1 page? V1 data is downloadable from the page you linked above.

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written by GenoMax GenoMax

yes, I am still waiting for a reply :(

• 0 views • link
written by Lila M Lila M

1 answer

Try the following repository,

https://github.com/bioinfonerd/Transcription-Factor-Databases/tree/master/Ttrust_v2

• 0 views • link
written by Arup Ghosh Arup Ghosh

Fantastic!!! Thank you!

I've also been able to retrieve it by querying OmnipathR

library(OmnipathR)
trrust <- import_tf_target_interactions(
  resources = "TRRUST",
  organism = 9606  
)

Will check the concordance :) Thank you!

• 0 views • link
written by Lila M Lila M

This is pretty cool! How did you make it?

• 0 views • link
written by Lila M Lila M

Internet Archive/WayBackMachine (https://archive.org/ ) takes snapshots of web pages around the globe over time. You can search the archive for sites that may no longer be there or are temporarily down. Sometimes they will capture deep links to text files, such as in the case.

• 0 views • link
written by GenoMax GenoMax

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