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Basics of WGCNA

I am new to bioinformatics and am trying to run WGCNA. I have someone who has developed R script for me; however, I hate not understanding what is going on. I know from previous posts there used to be some core documents/guides available; however, I am not seeing anything that is more recent. Does anyone have any recommendations where I should look?

wgcna
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updated by pinheirofabiano • pinheirofabiano • written by brooke.bell1299 • brooke.bell1299

take a look at BioNERO, it's a nice R package for gene co-expression analysis..

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written by pinheirofabiano • pinheirofabiano

1 answer

The manual for the package is found here.

The archived documentation from the authors at UCLA is found here.

A simple google also showed some good tutorials/resources. See this detailed explanation, for example.

In R, you can also get the manual pages to launch in a browser for each function by adding a ? before the function. For example:

library(WGCNA)
?newConsensusTree()
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written by dthorbur dthorbur

ATpoint had found this shared folder from WGCNA author that has help docs etc. Links in this answer --> WGCNA package.

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written by GenoMax GenoMax

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