PAML output
Hello, I'm new to using codeml and some of the matters are consusing, especially using branch model, site model, and log likelihood ratio. can someone please help me where I can discuss the whole process, and how I can interpret the results? I will be really grateful if anyone helps.
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Morjina •
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Maybe this paper would help - https://pmc.ncbi.nlm.nih.gov/articles/PMC10127084/
Also you might want to consider this paper and tool: https://onlinelibrary.wiley.com/doi/abs/10.1002/ece3.5015