fasterq-dump fails before completing lookup
mannda1@LAPTOP-DAPQ7ISB:/mnt/e/Mannda/fastq.files$ fasterq-dump SRR23490337 --include-technical --split-files --progress
lookup :|-------------------------- 52.06%mannda1@LAPTOP-DAPQ7ISB:/mnt/e/Mannda/fastq.files$
" i personally suspect that it could be storage becease i have 350gb of storage available the sra file i have are aroung 8gb i have 6 of them, initially i downloded one sra file anf the lookup terminated around 74%, now that i downloaded 6 of the SRA file its terminating at 52%"
help pls
• 783 views
•
link
updated
by
GenoMax
•
written
by
nmannda148 •
•
written
by
nmannda148 •
1 answer
Looks like this is a 10x single cell dataset. You should download the BAM file linked from https://trace.ncbi.nlm.nih.gov/Traces/?view=run_browser&acc=SRR23490337&display=data-access
Then use bamtofastq utility provided by 10x to regenerate the fastq files: https://github.com/10XGenomics/bamtofastq
Log in to answer this question.