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WGS for CNV and Aneuploidy analysis

Hello, I’m planning to run whole genome sequencing on sheep cells for CNV and aneuploidy analysis. I’m wondering what sequencing depth is typically recommended, how many million reads I should ask for, and what read length would be ideal. While this project involves sheep, I’d love to hear any general rules of thumb for different genome sizes. Also, if you have any tool recommendations for this kind of analysis, I’m all ears. Thank you.

cnv aneuploidy wgs

"how many million cells" - are you talking WGS or single cell scWGS ?

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