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Can't run CrossMap

I can't run my crossmap after i successfully installed it. It says

CrossMap.py: command not found

I installed it using

conda install crossmap -y

tried other method using

pip install CrossMap

But it resulted in a lot of

Requirement already satisfied: CrossMap in /mydirectory

can anyone help?

I already installed all of this in my conda bioinformatics environment. Thanks

crossmap
• 1,174 views • link
written by Muhammad • Muhammad

You will need python3. What does which python or which python3 produce?

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written by GenoMax GenoMax

it produces

/home/myname/micromamba/envs/bioinfo/bin/python3

tried to do

conda create --name bioinfo python=3.y -y

but when i active the bioinfo env it produce error

critical libmamba Cannot activate, prefix does not exist at: '/home/myname/micromamba/envs/bioinfo'

i tried reinstalling the package provided by the book, so far it got normal again, but i still can't run crossmap, any ideas?

my which python produces

/home/myname/micromamba/envs/bioinfo/bin/python
• 0 views • link
written by Muhammad • Muhammad

0 answers

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