Single cell whole genome sequence
Hi, I have single-cell whole genome sequencing data for four stages of erythroid differentiation, with each stage having two replicates (n=2). I want to identify the differences between each stage, such as the final stage being more condensed than the 1st. Which pipeline is recommended for scWGS analysis?
• 926 views
•
link
updated
by
GenoMax
•
written
by
drajangirija •
•
written
by
drajangirija •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Upward Sloping P Value Distribution in ATAC-seq Analysis
written by jbern •
-
RNA-Seq | DESeq2 | differentially expressed genes | Dispersion
written by Dominic •
-
Validity of statistical tests with Single Cell
written by HERMAN •
-
Should I normalize the data before or after filtering to a particular cell type?
written by gt •
-
Comparison of two populations of scRNAseq cells
written by bioinf.questions •
-
How to compare cell-type ratios in sc-RNA seq data?
written by sc-ruzafa •
-
FunPat Data Organization
written by nicolecomfort3 •
-
Differential expression without technical replicates
written by wstfljs
-
Memory Requirements For Running Bowtie2 Tophat2 And Cufflinks
written by ancient_learner
-
Exome Sequencing Depth/Target Considerations And Shared Controls
written by Ryan D
Please specify what kind of technology you are using.
We have used Illumina-NovaseqX
I was asking about the actual single cell libraries not the sequencing.